******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/447/447.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10148 1.0000 500 10397 1.0000 500 10964 1.0000 500 1696 1.0000 500 17024 1.0000 500 20845 1.0000 500 21525 1.0000 500 22305 1.0000 500 22577 1.0000 500 23554 1.0000 500 23775 1.0000 500 24387 1.0000 500 2481 1.0000 500 2494 1.0000 500 24947 1.0000 500 263135 1.0000 500 269335 1.0000 500 3116 1.0000 500 38111 1.0000 500 38543 1.0000 500 4105 1.0000 500 4288 1.0000 500 4415 1.0000 500 5328 1.0000 500 5548 1.0000 500 5790 1.0000 500 5840 1.0000 500 6895 1.0000 500 8330 1.0000 500 8978 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/447/447.seqs.fa -oc motifs/447 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 30 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 15000 N= 30 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.270 C 0.223 G 0.237 T 0.270 Background letter frequencies (from dataset with add-one prior applied): A 0.270 C 0.223 G 0.237 T 0.270 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 16 sites = 16 llr = 192 E-value = 5.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 3133:2::13:2:45: pos.-specific C 676295:961489:4a probability G 121::1:13:2::1:: matrix T :::513a::74:161: bits 2.2 * 1.9 * * 1.7 ** * 1.5 * ** ** * Relative 1.3 * ** ** * Entropy 1.1 * ** ** * (17.3 bits) 0.9 ** * **** ** * 0.6 *** * **** ***** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel CCCTCCTCCTCCCTAC consensus A AA T GAT AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 269335 364 2.51e-08 ATTCCCTCTA CCCTCCTCCTCCCGAC ACGCAACGGA 23554 222 8.99e-08 TGCAATACGT CCCTCGTCCTTCCAAC TGCATAGTAC 6895 462 2.69e-07 GATTTTGTTC ACCCCATCGTCCCTCC CACTTGTAGC 2494 452 3.78e-07 CTCGCCTACT CGCTCCTCCTTCTTCC TTCCAGATTC 38543 459 4.20e-07 ATTTGTTGTC CCCTTTTCCTGCCTCC GTAAACCGAG 10397 326 4.20e-07 AACAACTCGA AGCACCTCCACCCACC AATCTTCATC 10964 324 5.15e-07 CAGTCTGTCA AACTCATCCTTCCTCC TTCCAGTGGT 22577 386 6.97e-07 CCAGCCCCGA CCCTCCTCGATACAAC TAACGGCGCC 1696 475 7.66e-07 ATAGAAAACC CCAACCTCAATCCTCC TCTGTCAACC 4288 473 1.12e-06 GAGCAACAAC ACGCCTTCCTCCCTAC GTTACTACTA 24947 417 1.22e-06 CAACAACGTA CACCCTTCGTCCCAAC TTTCTCGTCT 23775 468 2.22e-06 TGACCGTTGT GGAACCTCCTGCCACC ACAACACAGC 5790 340 4.73e-06 AACCGCTGTT GCCTCCTCGCCACTAC CTCTCGACGG 263135 116 4.73e-06 GTTATTCGCT CCAACTTCAAGCCAAC TTCAATAATT 5840 340 9.15e-06 TATATATTGC CCATCATGCTTCTTAC CAACAATCTG 21525 476 1.46e-05 AATAGTGGAT ACAATCTCCTCACTTC CACCTCTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 269335 2.5e-08 363_[+1]_121 23554 9e-08 221_[+1]_263 6895 2.7e-07 461_[+1]_23 2494 3.8e-07 451_[+1]_33 38543 4.2e-07 458_[+1]_26 10397 4.2e-07 325_[+1]_159 10964 5.1e-07 323_[+1]_161 22577 7e-07 385_[+1]_99 1696 7.7e-07 474_[+1]_10 4288 1.1e-06 472_[+1]_12 24947 1.2e-06 416_[+1]_68 23775 2.2e-06 467_[+1]_17 5790 4.7e-06 339_[+1]_145 263135 4.7e-06 115_[+1]_369 5840 9.1e-06 339_[+1]_145 21525 1.5e-05 475_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=16 seqs=16 269335 ( 364) CCCTCCTCCTCCCGAC 1 23554 ( 222) CCCTCGTCCTTCCAAC 1 6895 ( 462) ACCCCATCGTCCCTCC 1 2494 ( 452) CGCTCCTCCTTCTTCC 1 38543 ( 459) CCCTTTTCCTGCCTCC 1 10397 ( 326) AGCACCTCCACCCACC 1 10964 ( 324) AACTCATCCTTCCTCC 1 22577 ( 386) CCCTCCTCGATACAAC 1 1696 ( 475) CCAACCTCAATCCTCC 1 4288 ( 473) ACGCCTTCCTCCCTAC 1 24947 ( 417) CACCCTTCGTCCCAAC 1 23775 ( 468) GGAACCTCCTGCCACC 1 5790 ( 340) GCCTCCTCGCCACTAC 1 263135 ( 116) CCAACTTCAAGCCAAC 1 5840 ( 340) CCATCATGCTTCTTAC 1 21525 ( 476) ACAATCTCCTCACTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 14550 bayes= 10.5647 E= 5.0e-004 21 133 -92 -1064 -111 162 -34 -1064 21 149 -192 -1064 21 -25 -1064 89 -1064 197 -1064 -111 -53 116 -192 -11 -1064 -1064 -1064 189 -1064 207 -192 -1064 -111 149 8 -1064 -11 -183 -1064 135 -1064 97 -34 48 -53 186 -1064 -1064 -1064 197 -1064 -111 47 -1064 -192 106 89 97 -1064 -211 -1064 216 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 16 E= 5.0e-004 0.312500 0.562500 0.125000 0.000000 0.125000 0.687500 0.187500 0.000000 0.312500 0.625000 0.062500 0.000000 0.312500 0.187500 0.000000 0.500000 0.000000 0.875000 0.000000 0.125000 0.187500 0.500000 0.062500 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.937500 0.062500 0.000000 0.125000 0.625000 0.250000 0.000000 0.250000 0.062500 0.000000 0.687500 0.000000 0.437500 0.187500 0.375000 0.187500 0.812500 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.375000 0.000000 0.062500 0.562500 0.500000 0.437500 0.000000 0.062500 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CA]C[CA][TA]C[CT]TC[CG][TA][CT]CC[TA][AC]C -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 12 sites = 30 llr = 252 E-value = 3.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :31:222:3:6: pos.-specific C :::::1::1:1: probability G a319424a:a:6 matrix T :481464:6:33 bits 2.2 1.9 * * * 1.7 * * * * 1.5 * * * * Relative 1.3 * * * * Entropy 1.1 * ** * * (12.1 bits) 0.9 * ** * * 0.6 * ** ***** 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel GTTGTTGGTGAG consensus A GGT A TT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 10964 457 1.82e-07 GATTTTGACG GGTGGTGGTGAG TTCTGGCAGC 23775 104 3.11e-07 GATGTTTGTT GGTGTTGGTGAG ATGAATGTGC 22305 442 5.34e-06 GAGAGAGGGT GTTGTATGTGAG CCAAAGAAGC 4288 166 7.66e-06 TCTGTGGTGT GTTGTTGGTGTT GTAGAAGTGT 5790 77 1.16e-05 CTCTTTTTAG GTTGGTGGTGCG AGGCGACGGA 10148 385 1.16e-05 AACTAGCTTT GTTGTGTGTGTG GGTGTGGTGG 22577 144 1.36e-05 CATTGTTGCT GGTGTGTGTGTG TGGTTTGTTG 3116 366 1.87e-05 ACAAGAACGA GGTGGATGTGAT GACAAAACCA 21525 20 2.06e-05 CTGGAGAGAA GATGGATGTGAT GGCACATCAC 263135 229 2.42e-05 GGTTGGCCTG GTTTGTGGTGAG TTTGTGCTGT 24947 232 2.74e-05 CACCGTTCAT GTTGTCGGTGTG TGGAGGCATT 20845 155 3.15e-05 ATTTTCGGTT GTTGTTGGTGAC TTCATCGATC 38111 69 3.65e-05 GTTGCTGGGT GATGTTTGAGTT TCCTCGAGAC 269335 66 3.65e-05 TCGAGGAAGA GGGGTTGGTGAT TGGGAGATTC 23554 293 3.65e-05 AGCAAAGGCT GATGTGAGAGAG GGCTGATCTC 1696 352 4.11e-05 GCAGCGTAGC GGTGGTTGCGTG AGAACCAATG 2494 113 4.55e-05 TTCGCTTGGA GATGATTGTGTT AGGAAGTACC 4415 153 5.15e-05 GGAGATGGCA GATGTTGGTGAA CGATGGGCTT 5840 135 5.45e-05 AAGTGTCATC GTAGATGGTGAG AAGAAGTATT 10397 16 6.87e-05 ATCTAATGAC GGTGGCAGAGAG GGAGGTGGCA 6895 438 7.59e-05 CATTCCTTCT GGTGATGGTGGG TTGATTTTGT 8330 313 8.50e-05 AAGTCTGTCA GATGAGAGAGAG TGAGAAGGGC 4105 66 9.39e-05 GATGTTATCC GTTGTGAGCGAG CAGTTCCCGC 2481 326 1.02e-04 CAATCGCAAT GATGGGGGTGCT GCGTGAGTTC 24387 474 1.02e-04 GCGCCGAGAG GAGGGAGGAGAG GCGCACTAGT 17024 39 1.02e-04 CTTTCAAATG CTTGGTTGAGAG CCACATGTTG 8978 268 1.54e-04 TTGTTCCTTT GATGTTTGATAG GTCCGAAAGA 5328 222 2.71e-04 GGGGTTGGGA GGAGATTGAGAT GCTGGTTTTA 5548 233 3.07e-04 GCATGATTTG GTTGGATTTGTG TTGACGAACA 38543 411 8.82e-04 GGTTTGCCGG GTGTGTAGAGAT AGTGTGGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10964 1.8e-07 456_[+2]_32 23775 3.1e-07 103_[+2]_385 22305 5.3e-06 441_[+2]_47 4288 7.7e-06 165_[+2]_323 5790 1.2e-05 76_[+2]_412 10148 1.2e-05 384_[+2]_104 22577 1.4e-05 143_[+2]_345 3116 1.9e-05 365_[+2]_123 21525 2.1e-05 19_[+2]_469 263135 2.4e-05 228_[+2]_260 24947 2.7e-05 231_[+2]_257 20845 3.2e-05 154_[+2]_334 38111 3.7e-05 68_[+2]_420 269335 3.7e-05 65_[+2]_423 23554 3.7e-05 292_[+2]_196 1696 4.1e-05 351_[+2]_137 2494 4.6e-05 112_[+2]_376 4415 5.1e-05 152_[+2]_336 5840 5.5e-05 134_[+2]_354 10397 6.9e-05 15_[+2]_473 6895 7.6e-05 437_[+2]_51 8330 8.5e-05 312_[+2]_176 4105 9.4e-05 65_[+2]_423 2481 0.0001 325_[+2]_163 24387 0.0001 473_[+2]_15 17024 0.0001 38_[+2]_450 8978 0.00015 267_[+2]_221 5328 0.00027 221_[+2]_267 5548 0.00031 232_[+2]_256 38543 0.00088 410_[+2]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=12 seqs=30 10964 ( 457) GGTGGTGGTGAG 1 23775 ( 104) GGTGTTGGTGAG 1 22305 ( 442) GTTGTATGTGAG 1 4288 ( 166) GTTGTTGGTGTT 1 5790 ( 77) GTTGGTGGTGCG 1 10148 ( 385) GTTGTGTGTGTG 1 22577 ( 144) GGTGTGTGTGTG 1 3116 ( 366) GGTGGATGTGAT 1 21525 ( 20) GATGGATGTGAT 1 263135 ( 229) GTTTGTGGTGAG 1 24947 ( 232) GTTGTCGGTGTG 1 20845 ( 155) GTTGTTGGTGAC 1 38111 ( 69) GATGTTTGAGTT 1 269335 ( 66) GGGGTTGGTGAT 1 23554 ( 293) GATGTGAGAGAG 1 1696 ( 352) GGTGGTTGCGTG 1 2494 ( 113) GATGATTGTGTT 1 4415 ( 153) GATGTTGGTGAA 1 5840 ( 135) GTAGATGGTGAG 1 10397 ( 16) GGTGGCAGAGAG 1 6895 ( 438) GGTGATGGTGGG 1 8330 ( 313) GATGAGAGAGAG 1 4105 ( 66) GTTGTGAGCGAG 1 2481 ( 326) GATGGGGGTGCT 1 24387 ( 474) GAGGGAGGAGAG 1 17024 ( 39) CTTGGTTGAGAG 1 8978 ( 268) GATGTTTGATAG 1 5328 ( 222) GGAGATTGAGAT 1 5548 ( 233) GTTGGATTTGTG 1 38543 ( 411) GTGTGTAGAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 14670 bayes= 8.93074 E= 3.1e-003 -1155 -274 203 -1155 15 -1155 34 57 -202 -1155 -124 163 -1155 -1155 198 -201 -70 -1155 76 68 -70 -174 -24 107 -70 -1155 87 57 -1155 -1155 203 -301 15 -174 -1155 123 -1155 -1155 203 -301 123 -174 -283 -2 -302 -274 142 15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 30 E= 3.1e-003 0.000000 0.033333 0.966667 0.000000 0.300000 0.000000 0.300000 0.400000 0.066667 0.000000 0.100000 0.833333 0.000000 0.000000 0.933333 0.066667 0.166667 0.000000 0.400000 0.433333 0.166667 0.066667 0.200000 0.566667 0.166667 0.000000 0.433333 0.400000 0.000000 0.000000 0.966667 0.033333 0.300000 0.066667 0.000000 0.633333 0.000000 0.000000 0.966667 0.033333 0.633333 0.066667 0.033333 0.266667 0.033333 0.033333 0.633333 0.300000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- G[TAG]TG[TG][TG][GT]G[TA]G[AT][GT] -------------------------------------------------------------------------------- Time 14.93 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 12 sites = 14 llr = 157 E-value = 4.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :a::65:54:98 pos.-specific C a:9a11a2:81: probability G ::1::3::62:2 matrix T ::::31:3:::: bits 2.2 * * * 1.9 ** * * 1.7 ** * * 1.5 **** * Relative 1.3 **** * ** Entropy 1.1 **** * **** (16.2 bits) 0.9 **** * **** 0.6 ***** * **** 0.4 ***** ****** 0.2 ************ 0.0 ------------ Multilevel CACCAACAGCAA consensus TG TAG G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 4105 476 2.96e-07 CATCTACCAC CACCAACAACAA TAACAACATC 10964 23 2.96e-07 TATCAAACAG CACCAACAACAA CGGGCAAGTA 23554 205 1.11e-06 TATCTTACTT CACCTGCTGCAA TACGTCCCTC 22577 483 1.11e-06 GCCAACAACA CACCAGCAGCAG CCCACG 20845 46 1.11e-06 AAAGAAAAAG CACCACCTGCAA TATCGGGCAA 2494 477 1.93e-06 CTTCCAGATT CACCCACCGCAA CAATACAACA 10397 303 1.93e-06 ATAACAACAA CAGCAACAGCAA CAACAACTCG 38111 406 2.22e-06 ACACATAAAA CACCAACAAGAA GATCGAACGA 5840 483 2.54e-06 GTCCGAAGAC CACCTCCTGCAA AGAATC 21525 4 6.44e-06 CAA CACCAACTGGAG AGAAGATGGA 5328 359 7.97e-06 TGATGTTGGA CACCTTCAACAA AACATTCAGT 17024 470 9.10e-06 TGCACCATCA CACCCACCGCCA CAGCCCATCG 8978 38 1.40e-05 ATCAATAACT CAGCTGCAGCAG TATCACTCCG 6895 401 2.09e-05 TTACGTCAAG CACCAGCCAGCA CCTGCTTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 4105 3e-07 475_[+3]_13 10964 3e-07 22_[+3]_466 23554 1.1e-06 204_[+3]_284 22577 1.1e-06 482_[+3]_6 20845 1.1e-06 45_[+3]_443 2494 1.9e-06 476_[+3]_12 10397 1.9e-06 302_[+3]_186 38111 2.2e-06 405_[+3]_83 5840 2.5e-06 482_[+3]_6 21525 6.4e-06 3_[+3]_485 5328 8e-06 358_[+3]_130 17024 9.1e-06 469_[+3]_19 8978 1.4e-05 37_[+3]_451 6895 2.1e-05 400_[+3]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=12 seqs=14 4105 ( 476) CACCAACAACAA 1 10964 ( 23) CACCAACAACAA 1 23554 ( 205) CACCTGCTGCAA 1 22577 ( 483) CACCAGCAGCAG 1 20845 ( 46) CACCACCTGCAA 1 2494 ( 477) CACCCACCGCAA 1 10397 ( 303) CAGCAACAGCAA 1 38111 ( 406) CACCAACAAGAA 1 5840 ( 483) CACCTCCTGCAA 1 21525 ( 4) CACCAACTGGAG 1 5328 ( 359) CACCTTCAACAA 1 17024 ( 470) CACCCACCGCCA 1 8978 ( 38) CAGCTGCAGCAG 1 6895 ( 401) CACCAGCCAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 14670 bayes= 11.255 E= 4.1e-003 -1045 216 -1045 -1045 189 -1045 -1045 -1045 -1045 194 -73 -1045 -1045 216 -1045 -1045 108 -64 -1045 8 89 -64 27 -191 -1045 216 -1045 -1045 89 -6 -1045 8 40 -1045 144 -1045 -1045 182 -14 -1045 166 -64 -1045 -1045 154 -1045 -14 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 14 E= 4.1e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.142857 0.000000 0.285714 0.500000 0.142857 0.285714 0.071429 0.000000 1.000000 0.000000 0.000000 0.500000 0.214286 0.000000 0.285714 0.357143 0.000000 0.642857 0.000000 0.000000 0.785714 0.214286 0.000000 0.857143 0.142857 0.000000 0.000000 0.785714 0.000000 0.214286 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- CACC[AT][AG]C[ATC][GA][CG]A[AG] -------------------------------------------------------------------------------- Time 22.33 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10148 2.25e-02 384_[+2(1.16e-05)]_8_[+2(6.87e-05)]_\ 84 10397 1.26e-06 15_[+2(6.87e-05)]_275_\ [+3(1.93e-06)]_11_[+1(4.20e-07)]_159 10964 1.21e-09 22_[+3(2.96e-07)]_21_[+3(6.96e-05)]_\ 212_[+1(7.38e-05)]_28_[+1(5.15e-07)]_65_[+2(8.50e-05)]_40_[+2(1.82e-07)]_\ 32 1696 2.67e-04 351_[+2(4.11e-05)]_111_\ [+1(7.66e-07)]_10 17024 4.99e-03 469_[+3(9.10e-06)]_19 20845 3.10e-04 45_[+3(1.11e-06)]_97_[+2(3.15e-05)]_\ 334 21525 2.97e-05 3_[+3(6.44e-06)]_4_[+2(2.06e-05)]_\ 444_[+1(1.46e-05)]_9 22305 3.05e-02 441_[+2(5.34e-06)]_47 22577 2.84e-07 143_[+2(1.36e-05)]_230_\ [+1(6.97e-07)]_81_[+3(1.11e-06)]_6 23554 1.07e-07 204_[+3(1.11e-06)]_5_[+1(8.99e-08)]_\ 55_[+2(3.65e-05)]_196 23775 4.23e-06 103_[+2(3.11e-07)]_352_\ [+1(2.22e-06)]_17 24387 2.61e-01 500 2481 1.83e-01 500 2494 7.94e-07 112_[+2(4.55e-05)]_327_\ [+1(3.78e-07)]_9_[+3(1.93e-06)]_12 24947 6.36e-04 231_[+2(2.74e-05)]_173_\ [+1(1.22e-06)]_68 263135 7.91e-04 115_[+1(4.73e-06)]_97_\ [+2(2.42e-05)]_260 269335 2.13e-05 65_[+2(3.65e-05)]_286_\ [+1(2.51e-08)]_121 3116 9.40e-02 365_[+2(1.87e-05)]_123 38111 6.77e-04 68_[+2(3.65e-05)]_325_\ [+3(2.22e-06)]_83 38543 3.06e-03 458_[+1(4.20e-07)]_26 4105 2.28e-04 65_[+2(9.39e-05)]_398_\ [+3(2.96e-07)]_13 4288 1.30e-04 1_[+2(5.77e-05)]_152_[+2(7.66e-06)]_\ 295_[+1(1.12e-06)]_12 4415 4.60e-02 152_[+2(5.15e-05)]_336 5328 5.77e-03 358_[+3(7.97e-06)]_130 5548 2.38e-01 500 5790 4.39e-04 76_[+2(1.16e-05)]_251_\ [+1(4.73e-06)]_145 5840 2.03e-05 134_[+2(5.45e-05)]_193_\ [+1(9.15e-06)]_127_[+3(2.54e-06)]_6 6895 7.74e-06 400_[+3(2.09e-05)]_25_\ [+2(7.59e-05)]_12_[+1(2.69e-07)]_23 8330 9.29e-02 312_[+2(8.50e-05)]_176 8978 2.27e-03 37_[+3(1.40e-05)]_451 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************