******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/456/456.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10024 1.0000 500 10447 1.0000 500 10452 1.0000 500 13065 1.0000 500 13877 1.0000 500 16755 1.0000 500 20783 1.0000 500 22027 1.0000 500 22891 1.0000 500 23313 1.0000 500 24584 1.0000 500 25446 1.0000 500 269387 1.0000 500 269439 1.0000 500 269752 1.0000 500 31372 1.0000 500 38261 1.0000 500 4116 1.0000 500 4666 1.0000 500 5924 1.0000 500 7375 1.0000 500 7743 1.0000 500 8721 1.0000 500 8789 1.0000 500 9852 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/456/456.seqs.fa -oc motifs/456 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 25 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12500 N= 25 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.260 C 0.225 G 0.248 T 0.268 Background letter frequencies (from dataset with add-one prior applied): A 0.260 C 0.225 G 0.248 T 0.268 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 18 llr = 235 E-value = 4.3e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 16416944473422333:942 pos.-specific C 91473:65537251761a:67 probability G :3111:111:::22:22:::1 matrix T ::11:1::::1414::4:1:: bits 2.2 * 1.9 * 1.7 * * 1.5 * * ** Relative 1.3 * * * ** Entropy 1.1 * * * * **** (18.8 bits) 0.9 * ***** ** * **** 0.6 ** ******** ** **** 0.4 ************ ** **** 0.2 **************** **** 0.0 --------------------- Multilevel CACCAACCCACACTCCTCACC consensus GA C AAACATAAAAA AA sequence C G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 10452 443 9.40e-11 AATTCTTATT CACCAAACCAATCTCCTCACC TTTAAATAAT 10447 443 9.40e-11 AATTCTTATT CACCAAACCAATCTCCTCACC TTTAAATAAC 269752 468 1.91e-09 GACAGCTCCT CGTCAACCAACCCTCCTCACC ACCTCCACGA 38261 474 7.03e-08 TCACCTCAAG CGCCCACACAACCACAACAAC GCAACC 269439 99 1.36e-07 GACGGTAACC CACCAACGCCAAGTCCTCAAC CGTCACGACC 20783 472 2.06e-07 TCGTCGGTGG CACACACACACACACATCTCC CATCCAGA 24584 469 3.71e-07 TACATCACAA CAAGCACCCACCCTCCCCTCC TCTCCATTAC 13065 474 3.71e-07 CACTACGCCA CACACACCGACAAGACACACC AACAAG 10024 183 6.39e-07 GATCAAACAG CAACAAGACACAATCCACAAG CTTCAGGCAC 13877 309 7.60e-07 CCACCATCAT CATCATCCAACTATCGTCACA GGGGACCAGT 31372 479 1.15e-06 CAACTCTAAC CGACAACACCTCCAACGCAAC C 269387 315 1.15e-06 CGTCGTTGTA CAATAACAACCTGTCAACAAA TTAAAATTGC 4116 403 1.25e-06 TCGAATCGTC CACCGTAACCCAACCCTCACC GCAACACTCC 8789 474 1.46e-06 CCTCTTCCAA CGACCACCAAAACGAGGCAAA CCACAA 4666 123 1.71e-06 GCAATATATC AAACAAACGACTTACCACACA ACCGAGCATT 23313 480 1.84e-06 CGCCTGACCT CGGCAAACAACAGCAAGCACC 22891 5 2.14e-06 TTAG ACCCAAAAAACTCGAAGCAAC TGGAACAGTA 25446 465 9.97e-06 GAGTTGGTCC CCATCAAAACCTTGCGCCACC TCCCTTCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10452 9.4e-11 442_[+1]_37 10447 9.4e-11 442_[+1]_37 269752 1.9e-09 467_[+1]_12 38261 7e-08 473_[+1]_6 269439 1.4e-07 98_[+1]_381 20783 2.1e-07 471_[+1]_8 24584 3.7e-07 468_[+1]_11 13065 3.7e-07 473_[+1]_6 10024 6.4e-07 182_[+1]_297 13877 7.6e-07 308_[+1]_171 31372 1.2e-06 478_[+1]_1 269387 1.2e-06 314_[+1]_165 4116 1.2e-06 402_[+1]_77 8789 1.5e-06 473_[+1]_6 4666 1.7e-06 122_[+1]_357 23313 1.8e-06 479_[+1] 22891 2.1e-06 4_[+1]_475 25446 1e-05 464_[+1]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=18 10452 ( 443) CACCAAACCAATCTCCTCACC 1 10447 ( 443) CACCAAACCAATCTCCTCACC 1 269752 ( 468) CGTCAACCAACCCTCCTCACC 1 38261 ( 474) CGCCCACACAACCACAACAAC 1 269439 ( 99) CACCAACGCCAAGTCCTCAAC 1 20783 ( 472) CACACACACACACACATCTCC 1 24584 ( 469) CAAGCACCCACCCTCCCCTCC 1 13065 ( 474) CACACACCGACAAGACACACC 1 10024 ( 183) CAACAAGACACAATCCACAAG 1 13877 ( 309) CATCATCCAACTATCGTCACA 1 31372 ( 479) CGACAACACCTCCAACGCAAC 1 269387 ( 315) CAATAACAACCTGTCAACAAA 1 4116 ( 403) CACCGTAACCCAACCCTCACC 1 8789 ( 474) CGACCACCAAAACGAGGCAAA 1 4666 ( 123) AAACAAACGACTTACCACACA 1 23313 ( 480) CGGCAAACAACAGCAAGCACC 1 22891 ( 5) ACCCAAAAAACTCGAAGCAAC 1 25446 ( 465) CCATCAAAACCTTGCGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 12000 bayes= 10.7844 E= 4.3e-009 -122 198 -1081 -1081 124 -101 17 -1081 58 98 -215 -127 -122 168 -215 -127 124 57 -215 -1081 178 -1081 -1081 -127 58 131 -215 -1081 78 115 -215 -1081 58 115 -115 -1081 148 31 -1081 -1081 10 157 -1081 -227 58 -2 -1081 53 -22 115 -57 -127 -22 -101 -16 73 10 168 -1081 -1081 10 131 -57 -1081 10 -101 -16 53 -1081 215 -1081 -1081 178 -1081 -1081 -127 58 144 -1081 -1081 -22 168 -215 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 18 E= 4.3e-009 0.111111 0.888889 0.000000 0.000000 0.611111 0.111111 0.277778 0.000000 0.388889 0.444444 0.055556 0.111111 0.111111 0.722222 0.055556 0.111111 0.611111 0.333333 0.055556 0.000000 0.888889 0.000000 0.000000 0.111111 0.388889 0.555556 0.055556 0.000000 0.444444 0.500000 0.055556 0.000000 0.388889 0.500000 0.111111 0.000000 0.722222 0.277778 0.000000 0.000000 0.277778 0.666667 0.000000 0.055556 0.388889 0.222222 0.000000 0.388889 0.222222 0.500000 0.166667 0.111111 0.222222 0.111111 0.222222 0.444444 0.277778 0.722222 0.000000 0.000000 0.277778 0.555556 0.166667 0.000000 0.277778 0.111111 0.222222 0.388889 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.388889 0.611111 0.000000 0.000000 0.222222 0.722222 0.055556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- C[AG][CA]C[AC]A[CA][CA][CA][AC][CA][ATC][CA][TAG][CA][CA][TAG]CA[CA][CA] -------------------------------------------------------------------------------- Time 5.00 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 25 llr = 256 E-value = 4.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A ::42:24243:4:31:13:1: pos.-specific C 33:12:::1::21:3:2::12 probability G 362274:611a:44::74378 matrix T 4:46246146:4626a:371: bits 2.2 1.9 1.7 * * 1.5 * * Relative 1.3 * * Entropy 1.1 * * * * (14.8 bits) 0.9 * * * *** * * 0.6 * * ** ** * *** *** 0.4 ** **** ** ********* 0.2 ********************* 0.0 --------------------- Multilevel TGTTGGTGATGATGTTGGTGG consensus CCAA TAATA TGAC CTG C sequence G G A C T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 7375 97 3.23e-10 CCGCTAGCAG GGTTGTTGTTGTTGTTGTTGG CGTTATCGTC 269752 253 1.15e-08 CCATCCCCGC CGTTGGTGGTGTTGCTGTTGG TGTCTCCTTT 13065 366 1.20e-07 CCATTGTCAA TGTTGTTGTTGTTGTTGTTGT TGTTGTTGTG 5924 85 2.79e-07 GAGTAGTGTT GGATGGAGAAGAGGCTGATGC CACGCAATGA 269439 238 1.10e-06 ACAACGCCGT GCAATTTGATGCTTCTGGTGG CGACGACTTT 20783 147 1.23e-06 TCTGGATAGT AGTTCATGATGCTTTTGATGG CTGGTTTGTG 10452 63 2.92e-06 TAGGCGTGTG CCGATGTATTGATATTGATGG AATGGAATAC 10447 69 2.92e-06 TAGGCGTGTG CCGATGTATTGATATTGATGG AATGGAATAC 7743 222 3.23e-06 ATGTGGATGA CGTCGGAGATGAGTTTGGAGG GGTGGGCGAG 4666 164 5.81e-06 CGTCGGCGTA TCGTGGAAAAGAGGCTGTTCG TTACCACGGT 4116 246 5.81e-06 GTCTGGAAGC TCATGGTTTGGTGTTTGGGGG CGTGGACTGG 9852 279 6.38e-06 GTGGAATCGC CGAGCAAGCTGATATTGAGGG AAGATGGAAA 22891 279 8.39e-06 CGTCCGTTCT TGAAGTAAAAGTCTTTGGGGG AAAGTTCATC 22027 380 9.17e-06 TAAAGAGGCG GAAGGTTGGTGTGTTTGTTGG GAACAAAGTT 16755 171 9.17e-06 GTGGGGTTGG TCTTCATGTTGCGATTGGTAC GATTGGAGTT 31372 67 1.19e-05 AATTGATGGG TGGTGGTGGAGATGATCGTCG GATGATGTCT 38261 97 1.81e-05 GGTACACTTG CGAGGTAGAAGATGCTCTTCC ATTCCCGTGG 8789 60 1.96e-05 ATCTCGCCAT TGTGTTTATTGTGATTGTGTG TGAAAGAGTG 8721 320 1.96e-05 CCGTTGGGAT GGGCGTTGTTGGCGTTCGTGG TGGAGCACGA 25446 150 1.96e-05 CGTCTGCAAC GGAACAACAAGAGATTGGTGG TTCAAGTGCA 13877 203 2.89e-05 TCGTTGGATG CGTTGGATTGGCTGTTCTGGC TTTCTACTGC 24584 13 3.11e-05 GTTTTGACAT GGTTGGATATGTTGCTAAGTG ATATGTCTGG 269387 375 3.88e-05 GCATGAAGTG TTGTGTTGCTGTTATTGATTC TCGCAATTCC 10024 226 7.20e-05 AATGGAGAGC TGATGATGAAACTGCTCGGAG GACAATCTGC 23313 76 7.68e-05 ATGTTTGCAC TCTTGATGATGCGAAGAGTGG GGTGACTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 7375 3.2e-10 96_[+2]_383 269752 1.1e-08 252_[+2]_227 13065 1.2e-07 365_[+2]_114 5924 2.8e-07 84_[+2]_395 269439 1.1e-06 237_[+2]_242 20783 1.2e-06 146_[+2]_333 10452 2.9e-06 62_[+2]_417 10447 2.9e-06 68_[+2]_411 7743 3.2e-06 221_[+2]_258 4666 5.8e-06 163_[+2]_316 4116 5.8e-06 245_[+2]_234 9852 6.4e-06 278_[+2]_201 22891 8.4e-06 278_[+2]_201 22027 9.2e-06 379_[+2]_100 16755 9.2e-06 170_[+2]_309 31372 1.2e-05 66_[+2]_413 38261 1.8e-05 96_[+2]_383 8789 2e-05 59_[+2]_420 8721 2e-05 319_[+2]_160 25446 2e-05 149_[+2]_330 13877 2.9e-05 202_[+2]_277 24584 3.1e-05 12_[+2]_467 269387 3.9e-05 374_[+2]_105 10024 7.2e-05 225_[+2]_254 23313 7.7e-05 75_[+2]_404 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=25 7375 ( 97) GGTTGTTGTTGTTGTTGTTGG 1 269752 ( 253) CGTTGGTGGTGTTGCTGTTGG 1 13065 ( 366) TGTTGTTGTTGTTGTTGTTGT 1 5924 ( 85) GGATGGAGAAGAGGCTGATGC 1 269439 ( 238) GCAATTTGATGCTTCTGGTGG 1 20783 ( 147) AGTTCATGATGCTTTTGATGG 1 10452 ( 63) CCGATGTATTGATATTGATGG 1 10447 ( 69) CCGATGTATTGATATTGATGG 1 7743 ( 222) CGTCGGAGATGAGTTTGGAGG 1 4666 ( 164) TCGTGGAAAAGAGGCTGTTCG 1 4116 ( 246) TCATGGTTTGGTGTTTGGGGG 1 9852 ( 279) CGAGCAAGCTGATATTGAGGG 1 22891 ( 279) TGAAGTAAAAGTCTTTGGGGG 1 22027 ( 380) GAAGGTTGGTGTGTTTGTTGG 1 16755 ( 171) TCTTCATGTTGCGATTGGTAC 1 31372 ( 67) TGGTGGTGGAGATGATCGTCG 1 38261 ( 97) CGAGGTAGAAGATGCTCTTCC 1 8789 ( 60) TGTGTTTATTGTGATTGTGTG 1 8721 ( 320) GGGCGTTGTTGGCGTTCGTGG 1 25446 ( 150) GGAACAACAAGAGATTGGTGG 1 13877 ( 203) CGTTGGATTGGCTGTTCTGGC 1 24584 ( 13) GGTTGGATATGTTGCTAAGTG 1 269387 ( 375) TTGTGTTGCTGTTATTGATTC 1 10024 ( 226) TGATGATGAAACTGCTCGGAG 1 23313 ( 76) TCTTGATGATGCGAAGAGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 12000 bayes= 8.90388 E= 4.7e-002 -269 32 18 58 -269 32 137 -274 47 -1129 -4 58 -38 -149 -63 106 -1129 -49 146 -75 -11 -1129 69 42 47 -1129 -1129 125 -38 -249 137 -116 76 -149 -104 42 11 -1129 -163 125 -269 -1129 196 -1129 47 10 -263 42 -1129 -149 54 106 30 -1129 83 -16 -170 32 -1129 125 -1129 -1129 -263 184 -170 -17 154 -1129 11 -1129 69 25 -269 -1129 18 134 -170 -90 146 -116 -1129 -17 162 -274 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 25 E= 4.7e-002 0.040000 0.280000 0.280000 0.400000 0.040000 0.280000 0.640000 0.040000 0.360000 0.000000 0.240000 0.400000 0.200000 0.080000 0.160000 0.560000 0.000000 0.160000 0.680000 0.160000 0.240000 0.000000 0.400000 0.360000 0.360000 0.000000 0.000000 0.640000 0.200000 0.040000 0.640000 0.120000 0.440000 0.080000 0.120000 0.360000 0.280000 0.000000 0.080000 0.640000 0.040000 0.000000 0.960000 0.000000 0.360000 0.240000 0.040000 0.360000 0.000000 0.080000 0.360000 0.560000 0.320000 0.000000 0.440000 0.240000 0.080000 0.280000 0.000000 0.640000 0.000000 0.000000 0.040000 0.960000 0.080000 0.200000 0.720000 0.000000 0.280000 0.000000 0.400000 0.320000 0.040000 0.000000 0.280000 0.680000 0.080000 0.120000 0.680000 0.120000 0.000000 0.200000 0.760000 0.040000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TCG][GC][TAG][TA]G[GTA][TA][GA][AT][TA]G[ATC][TG][GAT][TC]T[GC][GTA][TG]G[GC] -------------------------------------------------------------------------------- Time 9.69 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 4 llr = 91 E-value = 6.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::3:58:::3a:a::::3::: pos.-specific C 8:88:3:8a::a:5a:a3::a probability G 3a:35:a::8:::5:3:55:: matrix T :::::::3:::::::8::5a: bits 2.2 * * * * * 1.9 * * * *** * * ** 1.7 * * * *** * * ** 1.5 * * * *** * * ** Relative 1.3 **** ******** * * ** Entropy 1.1 ***************** ** (32.8 bits) 0.9 ***************** *** 0.6 ***************** *** 0.4 ********************* 0.2 ********************* 0.0 --------------------- Multilevel CGCCAAGCCGACACCTCGGTC consensus G AGGC T A G G AT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 10452 336 8.75e-13 GCTCACACTT CGCCAAGCCGACAGCTCGTTC CTTGTTCGAT 10447 336 8.75e-13 GCTCACACTT CGCCAAGCCGACAGCTCGTTC CTTGTTCGAT 5924 329 5.86e-11 GGCTTGTCAC CGACGAGCCAACACCTCAGTC AAAACAAACC 269752 2 3.30e-10 C GGCGGCGTCGACACCGCCGTC ACGTCTGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10452 8.8e-13 335_[+3]_144 10447 8.8e-13 335_[+3]_144 5924 5.9e-11 328_[+3]_151 269752 3.3e-10 1_[+3]_478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=4 10452 ( 336) CGCCAAGCCGACAGCTCGTTC 1 10447 ( 336) CGCCAAGCCGACAGCTCGTTC 1 5924 ( 329) CGACGAGCCAACACCTCAGTC 1 269752 ( 2) GGCGGCGTCGACACCGCCGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 12000 bayes= 11.5503 E= 6.5e+000 -865 174 1 -865 -865 -865 201 -865 -5 174 -865 -865 -865 174 1 -865 94 -865 101 -865 153 15 -865 -865 -865 -865 201 -865 -865 174 -865 -10 -865 215 -865 -865 -5 -865 160 -865 194 -865 -865 -865 -865 215 -865 -865 194 -865 -865 -865 -865 115 101 -865 -865 215 -865 -865 -865 -865 1 148 -865 215 -865 -865 -5 15 101 -865 -865 -865 101 90 -865 -865 -865 189 -865 215 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 4 E= 6.5e+000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.500000 0.000000 0.500000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 1.000000 0.000000 0.000000 0.250000 0.250000 0.500000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CG]G[CA][CG][AG][AC]G[CT]C[GA]ACA[CG]C[TG]C[GAC][GT]TC -------------------------------------------------------------------------------- Time 14.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10024 1.56e-04 182_[+1(6.39e-07)]_22_\ [+2(7.20e-05)]_254 10447 2.82e-17 68_[+2(2.92e-06)]_246_\ [+3(8.75e-13)]_86_[+1(9.40e-11)]_37 10452 2.82e-17 62_[+2(2.92e-06)]_252_\ [+3(8.75e-13)]_86_[+1(9.40e-11)]_37 13065 1.72e-06 365_[+2(1.20e-07)]_87_\ [+1(3.71e-07)]_6 13877 5.07e-05 202_[+2(2.89e-05)]_85_\ [+1(7.60e-07)]_171 16755 1.89e-02 170_[+2(9.17e-06)]_309 20783 8.29e-08 57_[+3(1.13e-05)]_68_[+2(1.23e-06)]_\ 304_[+1(2.06e-07)]_8 22027 6.28e-03 379_[+2(9.17e-06)]_100 22891 1.04e-04 4_[+1(2.14e-06)]_253_[+2(8.39e-06)]_\ 201 23313 1.23e-03 75_[+2(7.68e-05)]_342_\ [+1(4.02e-05)]_20_[+1(1.84e-06)] 24584 2.15e-04 12_[+2(3.11e-05)]_167_\ [+1(1.45e-05)]_247_[+1(3.71e-07)]_11 25446 2.39e-03 149_[+2(1.96e-05)]_294_\ [+1(9.97e-06)]_15 269387 7.54e-04 314_[+1(1.15e-06)]_39_\ [+2(3.88e-05)]_105 269439 1.09e-06 98_[+1(1.36e-07)]_13_[+2(5.90e-05)]_\ 84_[+2(1.10e-06)]_242 269752 7.28e-16 1_[+3(3.30e-10)]_230_[+2(1.15e-08)]_\ 22_[+2(2.48e-05)]_88_[+1(4.68e-05)]_42_[+1(1.91e-09)]_12 31372 8.22e-05 66_[+2(1.19e-05)]_391_\ [+1(1.15e-06)]_1 38261 2.89e-05 96_[+2(1.81e-05)]_356_\ [+1(7.03e-08)]_6 4116 7.29e-05 245_[+2(5.81e-06)]_136_\ [+1(1.25e-06)]_77 4666 1.60e-04 122_[+1(1.71e-06)]_20_\ [+2(5.81e-06)]_316 5924 3.38e-10 84_[+2(2.79e-07)]_223_\ [+3(5.86e-11)]_151 7375 6.20e-06 28_[+2(9.17e-06)]_47_[+2(3.23e-10)]_\ 166_[+2(1.20e-07)]_196 7743 3.14e-02 221_[+2(3.23e-06)]_258 8721 3.41e-02 319_[+2(1.96e-05)]_160 8789 2.56e-04 59_[+2(1.96e-05)]_393_\ [+1(1.46e-06)]_6 9852 5.76e-02 278_[+2(6.38e-06)]_166_\ [+2(6.38e-06)]_14 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************