******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/483/483.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 20982 1.0000 500 21757 1.0000 500 22018 1.0000 500 22401 1.0000 500 22481 1.0000 500 23394 1.0000 500 23540 1.0000 500 23686 1.0000 500 23962 1.0000 500 24000 1.0000 500 24149 1.0000 500 24366 1.0000 500 25322 1.0000 500 25449 1.0000 500 25781 1.0000 500 261233 1.0000 500 262855 1.0000 500 264804 1.0000 500 268516 1.0000 500 2877 1.0000 500 38973 1.0000 500 40831 1.0000 500 4146 1.0000 500 5201 1.0000 500 9632 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/483/483.seqs.fa -oc motifs/483 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 25 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12500 N= 25 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.265 C 0.236 G 0.232 T 0.267 Background letter frequencies (from dataset with add-one prior applied): A 0.265 C 0.236 G 0.232 T 0.267 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 16 sites = 20 llr = 208 E-value = 7.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 2::::1::3::5::3: pos.-specific C :6:17327:2522814 probability G :31::71:54:3::52 matrix T 82a93:83245:8225 bits 2.1 1.9 1.7 * 1.5 ** Relative 1.3 * ** ** Entropy 1.1 * **** * * ** (15.0 bits) 0.8 * ****** * ** 0.6 ******** * ** * 0.4 ************** * 0.2 **************** 0.0 ---------------- Multilevel TCTTCGTCGGCATCGT consensus AG TC TATTGCTAC sequence TC C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 4146 427 2.34e-09 TCACCATCGT TCTTCGTCGTCGTCGT CGTCGTCGTG 23540 162 2.96e-08 TGGTATCCAA TCTTCGTCGCCATCAT CTCCAGTTTT 24149 34 1.90e-07 GCATGAGTTG TCTTCCTCGGCACCGT CATTGGTTGA 261233 456 4.12e-07 CGGTCTCCCT TCTTCGTCATTCTCGG CAGGCCACAA 262855 43 6.32e-07 TGGCCTCTCT TCTTCGTTGTCGTTGT TGTGATGGGG 23394 105 1.98e-06 CTGTGTTGCA TCTCCGTCGCCATCGG CAGTGCTTGG 268516 283 3.09e-06 GATAATGTTG TGTTCGTTTGTATCTC TCAAGTCCAT 40831 94 3.81e-06 CGTTTGTACT TGTTCCTCTTCATCTC CTGGAAGCAA 24000 110 3.81e-06 ATCGTCTTTC TTTTCGCTGTCATCGC AGCTTCCGTC 23962 248 6.86e-06 CCATTGTTGT TGTTTGTTGTTGTTGT ATTGTGTTCG 23686 141 7.52e-06 ATGTAGAGAA TCGTTGTCGCTGTCGT TGATAATGAT 264804 227 1.37e-05 AGTACGTTTC TCTTTGCCAGTATTAC ATCTGTACAA 25322 319 1.37e-05 TTTTCGGCCC TTTTTCTTGGTATCTT TTACAATCTC 22018 157 1.60e-05 TCGATCGTGA TTTTTGGCAGTATCAT CACACTCCAC 2877 148 1.87e-05 ACCACCCACT TCTTCGGCAGTGCTGC GTCGGTACGT 21757 346 2.16e-05 GCAACTTTTA ACTTCCTTGTCCTCCC TGAACCTTTC 25781 443 2.49e-05 ACTCGACGGC AGTTCGTCTCTGCCAT TCATCTCGTC 22401 418 2.49e-05 TTCATGGCAA ACTTCCTCTGCCTCTG CTTCCTGCGC 25449 380 4.99e-05 TTGAGGATTG AGTTCATCATTCTCAT GTACAAGAAG 20982 480 8.02e-05 CGTCCGTCTC TCTCTGCCAGCACCCC GTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 4146 2.3e-09 426_[+1]_58 23540 3e-08 161_[+1]_323 24149 1.9e-07 33_[+1]_451 261233 4.1e-07 455_[+1]_29 262855 6.3e-07 42_[+1]_442 23394 2e-06 104_[+1]_380 268516 3.1e-06 282_[+1]_202 40831 3.8e-06 93_[+1]_391 24000 3.8e-06 109_[+1]_375 23962 6.9e-06 247_[+1]_237 23686 7.5e-06 140_[+1]_344 264804 1.4e-05 226_[+1]_258 25322 1.4e-05 318_[+1]_166 22018 1.6e-05 156_[+1]_328 2877 1.9e-05 147_[+1]_337 21757 2.2e-05 345_[+1]_139 25781 2.5e-05 442_[+1]_42 22401 2.5e-05 417_[+1]_67 25449 5e-05 379_[+1]_105 20982 8e-05 479_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=16 seqs=20 4146 ( 427) TCTTCGTCGTCGTCGT 1 23540 ( 162) TCTTCGTCGCCATCAT 1 24149 ( 34) TCTTCCTCGGCACCGT 1 261233 ( 456) TCTTCGTCATTCTCGG 1 262855 ( 43) TCTTCGTTGTCGTTGT 1 23394 ( 105) TCTCCGTCGCCATCGG 1 268516 ( 283) TGTTCGTTTGTATCTC 1 40831 ( 94) TGTTCCTCTTCATCTC 1 24000 ( 110) TTTTCGCTGTCATCGC 1 23962 ( 248) TGTTTGTTGTTGTTGT 1 23686 ( 141) TCGTTGTCGCTGTCGT 1 264804 ( 227) TCTTTGCCAGTATTAC 1 25322 ( 319) TTTTTCTTGGTATCTT 1 22018 ( 157) TTTTTGGCAGTATCAT 1 2877 ( 148) TCTTCGGCAGTGCTGC 1 21757 ( 346) ACTTCCTTGTCCTCCC 1 25781 ( 443) AGTTCGTCTCTGCCAT 1 22401 ( 418) ACTTCCTCTGCCTCTG 1 25449 ( 380) AGTTCATCATTCTCAT 1 20982 ( 480) TCTCTGCCAGCACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 12125 bayes= 10.1859 E= 7.0e-001 -41 -1097 -1097 158 -1097 134 11 -83 -1097 -1097 -221 183 -1097 -124 -1097 175 -1097 157 -1097 17 -240 8 159 -1097 -1097 -66 -121 149 -1097 157 -1097 17 18 -1097 111 -42 -1097 -24 79 58 -1097 108 -1097 91 92 -24 37 -1097 -1097 -24 -1097 158 -1097 176 -1097 -42 -8 -124 96 -42 -1097 57 -63 91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 20 E= 7.0e-001 0.200000 0.000000 0.000000 0.800000 0.000000 0.600000 0.250000 0.150000 0.000000 0.000000 0.050000 0.950000 0.000000 0.100000 0.000000 0.900000 0.000000 0.700000 0.000000 0.300000 0.050000 0.250000 0.700000 0.000000 0.000000 0.150000 0.100000 0.750000 0.000000 0.700000 0.000000 0.300000 0.300000 0.000000 0.500000 0.200000 0.000000 0.200000 0.400000 0.400000 0.000000 0.500000 0.000000 0.500000 0.500000 0.200000 0.300000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.800000 0.000000 0.200000 0.250000 0.100000 0.450000 0.200000 0.000000 0.350000 0.150000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TA][CG]TT[CT][GC]T[CT][GAT][GTC][CT][AGC][TC][CT][GAT][TC] -------------------------------------------------------------------------------- Time 4.94 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 18 llr = 192 E-value = 5.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 293192263:831474 pos.-specific C 8:39:6815a:37416 probability G :13:12::1::3:::: matrix T ::2::::32:2:2131 bits 2.1 * 1.9 * 1.7 * 1.5 ** ** * Relative 1.3 ** ** * * Entropy 1.1 ** ** * ** (15.4 bits) 0.8 ** ** * ** * ** 0.6 ** ***** ** **** 0.4 ** ************* 0.2 ** ************* 0.0 ---------------- Multilevel CAACACCACCAACAAC consensus C AATA TCTCTA sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 262855 470 2.94e-09 ACGACCACGA CACCACCACCAACAAC AACAACAACC 40831 411 8.12e-08 CTTCTCCAAC CAGCACCACCACTCAA ACCATCCACT 9632 446 2.13e-07 CAAATACACA CAACAACAACAACAAC AACAACAACT 20982 171 2.13e-07 CCTTGAAGGG CACCACCAGCAGCAAC GAGCAACCAT 5201 426 4.39e-07 AGGCAACCGC AACCACCTCCAGCCAA ACCAACTCTA 23394 446 2.06e-06 GACCTCTGAA CGGCACATCCACCAAC GATTTCATTT 4146 39 2.54e-06 TTCGCACGCC CATCAGCATCAGCATC AGTTGAAGCA 23686 465 3.12e-06 TCAATGACTC CAACACATCCTCCCTC CTCTCCCATG 23962 167 3.45e-06 CAGTGAAATC AACCACCACCAACTTC GACTTGGATT 22401 356 4.18e-06 ACCCTCGACG CAACAACACCTCACAC GCCTGTGAAC 24149 473 6.60e-06 AACCACCGTT CAGAACCATCAACCTA TTAGAGCCGA 24000 247 6.60e-06 TTGTGGTCGG CAGAACAAACAACCAA GGTTCATAAA 2877 57 1.18e-05 CGTAGGTAGA CATCAACTACAACTTC AACCTCTGCA 22018 254 1.60e-05 CAGTCTTCCA CAGCGACTACACTCAA TCCCGTGTCA 25449 438 1.99e-05 TTTGGCAACG CACCAGCATCAGTAAT ACCGCACGAG 24366 374 2.98e-05 ATAATTGAAT CGACACACCCTGCAAA TAGTTGCACT 22481 460 5.68e-05 CCAAACTACT AATCACCTCCTCTCCC TTCTGTCCAT 21757 469 7.00e-05 TTCCACGCAG CAACGGCCACAGAAAA TAAACCAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 262855 2.9e-09 469_[+2]_15 40831 8.1e-08 410_[+2]_74 9632 2.1e-07 445_[+2]_39 20982 2.1e-07 170_[+2]_314 5201 4.4e-07 425_[+2]_59 23394 2.1e-06 445_[+2]_39 4146 2.5e-06 38_[+2]_446 23686 3.1e-06 464_[+2]_20 23962 3.4e-06 166_[+2]_318 22401 4.2e-06 355_[+2]_129 24149 6.6e-06 472_[+2]_12 24000 6.6e-06 246_[+2]_238 2877 1.2e-05 56_[+2]_428 22018 1.6e-05 253_[+2]_231 25449 2e-05 437_[+2]_47 24366 3e-05 373_[+2]_111 22481 5.7e-05 459_[+2]_25 21757 7e-05 468_[+2]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=18 262855 ( 470) CACCACCACCAACAAC 1 40831 ( 411) CAGCACCACCACTCAA 1 9632 ( 446) CAACAACAACAACAAC 1 20982 ( 171) CACCACCAGCAGCAAC 1 5201 ( 426) AACCACCTCCAGCCAA 1 23394 ( 446) CGGCACATCCACCAAC 1 4146 ( 39) CATCAGCATCAGCATC 1 23686 ( 465) CAACACATCCTCCCTC 1 23962 ( 167) AACCACCACCAACTTC 1 22401 ( 356) CAACAACACCTCACAC 1 24149 ( 473) CAGAACCATCAACCTA 1 24000 ( 247) CAGAACAAACAACCAA 1 2877 ( 57) CATCAACTACAACTTC 1 22018 ( 254) CAGCGACTACACTCAA 1 25449 ( 438) CACCAGCATCAGTAAT 1 24366 ( 374) CGACACACCCTGCAAA 1 22481 ( 460) AATCACCTCCTCTCCC 1 21757 ( 469) CAACGGCCACAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 12125 bayes= 9.52812 E= 5.0e+000 -67 182 -1081 -1081 175 -1081 -106 -1081 7 23 26 -68 -125 191 -1081 -1081 175 -1081 -106 -1081 -25 137 -48 -1081 -25 172 -1081 -1081 107 -109 -1081 32 7 108 -206 -68 -1081 208 -1081 -1081 155 -1081 -1081 -26 33 50 52 -1081 -125 150 -1081 -26 75 91 -1081 -126 133 -209 -1081 6 55 123 -1081 -226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 18 E= 5.0e+000 0.166667 0.833333 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.277778 0.277778 0.277778 0.166667 0.111111 0.888889 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.222222 0.611111 0.166667 0.000000 0.222222 0.777778 0.000000 0.000000 0.555556 0.111111 0.000000 0.333333 0.277778 0.500000 0.055556 0.166667 0.000000 1.000000 0.000000 0.000000 0.777778 0.000000 0.000000 0.222222 0.333333 0.333333 0.333333 0.000000 0.111111 0.666667 0.000000 0.222222 0.444444 0.444444 0.000000 0.111111 0.666667 0.055556 0.000000 0.277778 0.388889 0.555556 0.000000 0.055556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- CA[ACG]CA[CA][CA][AT][CA]C[AT][ACG][CT][AC][AT][CA] -------------------------------------------------------------------------------- Time 10.04 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 17 sites = 17 llr = 195 E-value = 9.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :1:1::2:::112:4:: pos.-specific C ::6:125:14::31::2 probability G 46:14626:673196:6 matrix T 634851149:264::a1 bits 2.1 1.9 * 1.7 * * * 1.5 * * * Relative 1.3 ** * * Entropy 1.1 * ** *** *** (16.5 bits) 0.8 * ** * **** **** 0.6 ****** ***** **** 0.4 ****** ***** **** 0.2 ***************** 0.0 ----------------- Multilevel TGCTTGCGTGGTTGGTG consensus GTT GCAT C GC A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------- 22401 37 6.79e-10 CTCTGCGACT TGCTTGCGTGGGCGGTG CCCTGGCTTT 23540 106 4.27e-08 GCCAAAAAAT TGTTTGATTGGTTGATG GCATTACGGT 38973 332 6.92e-08 GGCAGGATGA GGCTTGCTTGGTGGATG TCGTTGAAGG 23686 390 2.42e-07 CGGCCAAGCG TGTTTGCGTGTGAGGTG AGCTCTTACG 261233 434 5.03e-07 CTTTCAGTCT TGCTGTCGTCGTCGGTC TCCCTTCTTC 268516 38 5.65e-07 ACAGGTTGCC TGCTGGATTGAGTGGTG ACTTGGTACT 5201 38 6.31e-07 AGGGAGTGCA GTCTTGGTTGGGAGGTG GAATGGTACG 2877 204 9.71e-07 TTCCGTGTGT GTCTTCATTCGTCGGTG AGGTGAATGA 20982 30 2.54e-06 GACTGGAGAT TGCACGGGTGGTTGGTC AGACGAGATG 23394 243 4.21e-06 GAGGTGCGAG GGCTTCGGTCTTCGGTC ATCGAGGGGG 24000 216 5.33e-06 CGTTTTGGTT TGTGGGAGTGGATGATG TTGATTGTGG 40831 184 6.67e-06 AAGTTCCACA TTCTTGCTCCGTCGATC CCAACCACGA 264804 169 1.08e-05 TCTAATATGG TGCTCCCTTCTTTGGTT TATTGCAGAG 24366 433 1.08e-05 GTTGATGCAA TATTTGTGTGATAGATG CACTGTAGTC 262855 329 1.23e-05 AGCGTAGGCT TATAGCCGTCGGTGATG GTGTATCATA 25449 171 1.67e-05 GATTTTGATG GTTTGGCGTGGAGCGTG GTCCATCAAA 25322 3 1.88e-05 TG GTTTGTTGTGGTTGATT TTGTGACGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 22401 6.8e-10 36_[+3]_447 23540 4.3e-08 105_[+3]_378 38973 6.9e-08 331_[+3]_152 23686 2.4e-07 389_[+3]_94 261233 5e-07 433_[+3]_50 268516 5.6e-07 37_[+3]_446 5201 6.3e-07 37_[+3]_446 2877 9.7e-07 203_[+3]_280 20982 2.5e-06 29_[+3]_454 23394 4.2e-06 242_[+3]_241 24000 5.3e-06 215_[+3]_268 40831 6.7e-06 183_[+3]_300 264804 1.1e-05 168_[+3]_315 24366 1.1e-05 432_[+3]_51 262855 1.2e-05 328_[+3]_155 25449 1.7e-05 170_[+3]_313 25322 1.9e-05 2_[+3]_481 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=17 seqs=17 22401 ( 37) TGCTTGCGTGGGCGGTG 1 23540 ( 106) TGTTTGATTGGTTGATG 1 38973 ( 332) GGCTTGCTTGGTGGATG 1 23686 ( 390) TGTTTGCGTGTGAGGTG 1 261233 ( 434) TGCTGTCGTCGTCGGTC 1 268516 ( 38) TGCTGGATTGAGTGGTG 1 5201 ( 38) GTCTTGGTTGGGAGGTG 1 2877 ( 204) GTCTTCATTCGTCGGTG 1 20982 ( 30) TGCACGGGTGGTTGGTC 1 23394 ( 243) GGCTTCGGTCTTCGGTC 1 24000 ( 216) TGTGGGAGTGGATGATG 1 40831 ( 184) TTCTTGCTCCGTCGATC 1 264804 ( 169) TGCTCCCTTCTTTGGTT 1 24366 ( 433) TATTTGTGTGATAGATG 1 262855 ( 329) TATAGCCGTCGGTGATG 1 25449 ( 171) GTTTGGCGTGGAGCGTG 1 25322 ( 3) GTTTGTTGTGGTTGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 17 n= 12100 bayes= 10.2688 E= 9.6e-002 -1073 -1073 61 128 -117 -1073 134 14 -1073 132 -1073 63 -117 -1073 -198 163 -1073 -101 61 99 -1073 -1 148 -118 -17 99 -39 -118 -1073 -1073 134 63 -1073 -200 -1073 182 -1073 58 148 -1073 -117 -1073 161 -60 -117 -1073 34 114 -59 32 -98 63 -1073 -200 202 -1073 64 -1073 134 -1073 -1073 -1073 -1073 191 -1073 -1 148 -118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 17 nsites= 17 E= 9.6e-002 0.000000 0.000000 0.352941 0.647059 0.117647 0.000000 0.588235 0.294118 0.000000 0.588235 0.000000 0.411765 0.117647 0.000000 0.058824 0.823529 0.000000 0.117647 0.352941 0.529412 0.000000 0.235294 0.647059 0.117647 0.235294 0.470588 0.176471 0.117647 0.000000 0.000000 0.588235 0.411765 0.000000 0.058824 0.000000 0.941176 0.000000 0.352941 0.647059 0.000000 0.117647 0.000000 0.705882 0.176471 0.117647 0.000000 0.294118 0.588235 0.176471 0.294118 0.117647 0.411765 0.000000 0.058824 0.941176 0.000000 0.411765 0.000000 0.588235 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.235294 0.647059 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TG][GT][CT]T[TG][GC][CA][GT]T[GC]G[TG][TC]G[GA]T[GC] -------------------------------------------------------------------------------- Time 15.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 20982 9.82e-07 29_[+3(2.54e-06)]_124_\ [+2(2.13e-07)]_293_[+1(8.02e-05)]_5 21757 4.73e-03 345_[+1(2.16e-05)]_107_\ [+2(7.00e-05)]_16 22018 2.08e-03 156_[+1(1.60e-05)]_81_\ [+2(1.60e-05)]_231 22401 2.82e-09 36_[+3(6.79e-10)]_302_\ [+2(4.18e-06)]_25_[+3(7.23e-05)]_4_[+1(2.49e-05)]_67 22481 8.20e-02 459_[+2(5.68e-05)]_25 23394 4.33e-07 104_[+1(1.98e-06)]_122_\ [+3(4.21e-06)]_186_[+2(2.06e-06)]_39 23540 3.46e-08 105_[+3(4.27e-08)]_39_\ [+1(2.96e-08)]_323 23686 1.59e-07 140_[+1(7.52e-06)]_233_\ [+3(2.42e-07)]_58_[+2(3.12e-06)]_20 23962 2.82e-04 77_[+2(2.79e-05)]_73_[+2(3.45e-06)]_\ 65_[+1(6.86e-06)]_237 24000 2.75e-06 109_[+1(3.81e-06)]_90_\ [+3(5.33e-06)]_14_[+2(6.60e-06)]_238 24149 2.17e-05 33_[+1(1.90e-07)]_20_[+1(9.23e-05)]_\ 387_[+2(6.60e-06)]_12 24366 3.62e-03 373_[+2(2.98e-05)]_43_\ [+3(1.08e-05)]_51 25322 3.11e-03 2_[+3(1.88e-05)]_299_[+1(1.37e-05)]_\ 166 25449 1.88e-04 170_[+3(1.67e-05)]_192_\ [+1(4.99e-05)]_42_[+2(1.99e-05)]_47 25781 1.19e-01 442_[+1(2.49e-05)]_42 261233 7.55e-06 433_[+3(5.03e-07)]_5_[+1(4.12e-07)]_\ 29 262855 9.97e-10 42_[+1(6.32e-07)]_270_\ [+3(1.23e-05)]_124_[+2(2.94e-09)]_15 264804 4.07e-04 168_[+3(1.08e-05)]_41_\ [+1(1.37e-05)]_119_[+3(9.70e-05)]_122 268516 4.82e-05 37_[+3(5.65e-07)]_228_\ [+1(3.09e-06)]_202 2877 4.17e-06 56_[+2(1.18e-05)]_75_[+1(1.87e-05)]_\ 40_[+3(9.71e-07)]_280 38973 1.57e-03 331_[+3(6.92e-08)]_152 40831 6.30e-08 93_[+1(3.81e-06)]_74_[+3(6.67e-06)]_\ 210_[+2(8.12e-08)]_74 4146 2.26e-08 38_[+2(2.54e-06)]_372_\ [+1(2.34e-09)]_58 5201 3.31e-06 37_[+3(6.31e-07)]_371_\ [+2(4.39e-07)]_59 9632 5.39e-03 383_[+2(2.29e-05)]_19_\ [+2(1.72e-05)]_11_[+2(2.13e-07)]_10_[+2(9.74e-05)]_13 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************