******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/49/49.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 11397 1.0000 500 15027 1.0000 500 1770 1.0000 500 20069 1.0000 500 21865 1.0000 500 22610 1.0000 500 23184 1.0000 500 23855 1.0000 500 23957 1.0000 500 24248 1.0000 500 24880 1.0000 500 25812 1.0000 500 261636 1.0000 500 263534 1.0000 500 268552 1.0000 500 268875 1.0000 500 269908 1.0000 500 28241 1.0000 500 28704 1.0000 500 31424 1.0000 500 32252 1.0000 500 33046 1.0000 500 39622 1.0000 500 40995 1.0000 500 41530 1.0000 500 5265 1.0000 500 5293 1.0000 500 5334 1.0000 500 6264 1.0000 500 bd1109 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/49/49.seqs.fa -oc motifs/49 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 30 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 15000 N= 30 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.265 C 0.239 G 0.239 T 0.257 Background letter frequencies (from dataset with add-one prior applied): A 0.265 C 0.239 G 0.239 T 0.257 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 22 llr = 254 E-value = 5.4e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :63:3312::2::1125::1: pos.-specific C :3::241:::112:2:::::1 probability G 9:1a523338257:5813517 matrix T 116::1447243192:46582 bits 2.1 1.9 * 1.7 * 1.4 * * * * Relative 1.2 * * ** * Entropy 1.0 * * ** * * ** (16.7 bits) 0.8 * * ** ** * **** 0.6 ***** ** ** ****** 0.4 ***** ** *** ****** 0.2 ********** ********** 0.0 --------------------- Multilevel GATGGCTTTGTGGTGGATTTG consensus CA AAGGG ATC T TGG sequence G A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 20069 338 5.55e-10 CCTGTGGGAA GATGGCTGTGCTGTGGATGTG CGGCGGGTTG 23184 57 6.40e-09 AGCTGCATCG GCTGCGGTGGTGGTGGATTTG CATCGGAAGC 31424 352 1.66e-08 GTTCCTCTGT GATGGCTGTGTGCTCAATTTG TCAACGTGTG 261636 436 1.66e-08 CTGGGAAGGC GATGGGATTGTTGTCGTTTTG TTTTAAGCTT 33046 23 1.43e-07 CTACGATGAT GATGGTTGTGTGGTAGTTGTT GAGTAAGGTA 28241 83 2.88e-07 AATATTATGA GCTGATGATTTGGTGGAGGTG GAGGGAGGGA 21865 58 2.88e-07 CTTCGCTTTT GAAGACCATGCTGTGGTGTTG TCATGTGCAT bd1109 98 3.60e-07 CGGTTGTGGT GAAGGGGTGGCGGTGGTGGTC GTTGTGGTTG 268552 367 5.52e-07 TTACAACGCA AAAGAAGTGGAGGTGGATTTG ATCAGGGCAA 5334 234 9.16e-07 AGATTTAAAT GAGGGACTTGGACTGGATTTG GTGGCGGACC 39622 175 1.94e-06 AGGGGGAGGA GAAGGAAATGAGCTTGAGGTT GCAACCTTCG 268875 173 2.13e-06 AGATCTCGGC GCTGCCGCTGTTGTTGTTGTT GTTGGAGAGT 23855 317 4.21e-06 TGGGTTACAA GTTGGATGGGTGCTGATGTTC ATCGTGGCCT 24880 284 4.56e-06 TGACTGCGGA GAGGGCTGGGAGGAGCATGTG TGGTGTGAGG 15027 205 5.35e-06 TTTTGATGAC GATGACAAGTTGTTGGGTTTG TTTACTGATG 25812 278 6.76e-06 CAGACGGTAG GCTGCCGTTGGCGTTATGTGG ATGGTATCGT 41530 13 1.13e-05 TTCGCGAGGA TATGAGTTTGTCGTGATGGAG GGAAGTTACA 1770 127 1.30e-05 TGGCTTGTCT GTTGGCTTTGATTTTGGTTGG ACTCTCTGAT 32252 107 1.40e-05 CCTACGTGAG TCTGGATTTGGTGTTGAATTC CCAAATTATA 263534 71 1.83e-05 CACTTGAGTT GCAGCACGTGAGGACGATGAG ATGCTGAATG 24248 130 1.83e-05 GTGACGCATA GAGAAGGGTTGGCTCGATGTG AGAGAGAACA 5265 32 2.23e-05 TCAATGCGAG GAAGAATATTGCGTAGATTGT CGCTTGACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 20069 5.5e-10 337_[+1]_142 23184 6.4e-09 56_[+1]_423 31424 1.7e-08 351_[+1]_128 261636 1.7e-08 435_[+1]_44 33046 1.4e-07 22_[+1]_457 28241 2.9e-07 82_[+1]_397 21865 2.9e-07 57_[+1]_422 bd1109 3.6e-07 97_[+1]_382 268552 5.5e-07 366_[+1]_113 5334 9.2e-07 233_[+1]_246 39622 1.9e-06 174_[+1]_305 268875 2.1e-06 172_[+1]_307 23855 4.2e-06 316_[+1]_163 24880 4.6e-06 283_[+1]_196 15027 5.4e-06 204_[+1]_275 25812 6.8e-06 277_[+1]_202 41530 1.1e-05 12_[+1]_467 1770 1.3e-05 126_[+1]_353 32252 1.4e-05 106_[+1]_373 263534 1.8e-05 70_[+1]_409 24248 1.8e-05 129_[+1]_350 5265 2.2e-05 31_[+1]_448 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=22 20069 ( 338) GATGGCTGTGCTGTGGATGTG 1 23184 ( 57) GCTGCGGTGGTGGTGGATTTG 1 31424 ( 352) GATGGCTGTGTGCTCAATTTG 1 261636 ( 436) GATGGGATTGTTGTCGTTTTG 1 33046 ( 23) GATGGTTGTGTGGTAGTTGTT 1 28241 ( 83) GCTGATGATTTGGTGGAGGTG 1 21865 ( 58) GAAGACCATGCTGTGGTGTTG 1 bd1109 ( 98) GAAGGGGTGGCGGTGGTGGTC 1 268552 ( 367) AAAGAAGTGGAGGTGGATTTG 1 5334 ( 234) GAGGGACTTGGACTGGATTTG 1 39622 ( 175) GAAGGAAATGAGCTTGAGGTT 1 268875 ( 173) GCTGCCGCTGTTGTTGTTGTT 1 23855 ( 317) GTTGGATGGGTGCTGATGTTC 1 24880 ( 284) GAGGGCTGGGAGGAGCATGTG 1 15027 ( 205) GATGACAAGTTGTTGGGTTTG 1 25812 ( 278) GCTGCCGTTGGCGTTATGTGG 1 41530 ( 13) TATGAGTTTGTCGTGATGGAG 1 1770 ( 127) GTTGGCTTTGATTTTGGTTGG 1 32252 ( 107) TCTGGATTTGGTGTTGAATTC 1 263534 ( 71) GCAGCACGTGAGGACGATGAG 1 24248 ( 130) GAGAAGGGTTGGCTCGATGTG 1 5265 ( 32) GAAGAATATTGCGTAGATTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 14400 bayes= 10.3797 E= 5.4e-004 -254 -1110 185 -150 126 19 -1110 -150 4 -1110 -81 120 -254 -1110 200 -1110 26 -39 106 -1110 26 61 -7 -150 -96 -81 41 67 -22 -239 41 67 -1110 -1110 19 150 -1110 -1110 178 -50 -22 -81 -7 67 -254 -81 119 8 -1110 -7 151 -150 -154 -1110 -1110 182 -154 -39 106 -18 -54 -239 169 -1110 104 -1110 -139 50 -254 -1110 41 131 -1110 -1110 93 108 -154 -1110 -81 159 -1110 -81 151 -50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 22 E= 5.4e-004 0.045455 0.000000 0.863636 0.090909 0.636364 0.272727 0.000000 0.090909 0.272727 0.000000 0.136364 0.590909 0.045455 0.000000 0.954545 0.000000 0.318182 0.181818 0.500000 0.000000 0.318182 0.363636 0.227273 0.090909 0.136364 0.136364 0.318182 0.409091 0.227273 0.045455 0.318182 0.409091 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.818182 0.181818 0.227273 0.136364 0.227273 0.409091 0.045455 0.136364 0.545455 0.272727 0.000000 0.227273 0.681818 0.090909 0.090909 0.000000 0.000000 0.909091 0.090909 0.181818 0.500000 0.227273 0.181818 0.045455 0.772727 0.000000 0.545455 0.000000 0.090909 0.363636 0.045455 0.000000 0.318182 0.636364 0.000000 0.000000 0.454545 0.545455 0.090909 0.000000 0.136364 0.772727 0.000000 0.136364 0.681818 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- G[AC][TA]G[GA][CAG][TG][TGA][TG]G[TAG][GT][GC]T[GT]G[AT][TG][TG]TG -------------------------------------------------------------------------------- Time 6.85 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 12 sites = 13 llr = 153 E-value = 6.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 18:8::8::74: pos.-specific C 4:129:1::3:1 probability G 5:9::a12a::9 matrix T :2::1::8::6: bits 2.1 * * 1.9 * * 1.7 * ** * * 1.4 * ** ** * Relative 1.2 ******** * Entropy 1.0 *********** (16.9 bits) 0.8 ************ 0.6 ************ 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel GAGACGATGATG consensus CT CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 5293 70 6.07e-08 ATTGGAAACG GAGACGATGATG ACGAATCAAT 41530 122 6.07e-08 GAGGATGAGG GAGACGATGATG GTTATCAGTT 261636 12 6.07e-08 GAACGGTTTA GAGACGATGATG TCGTCAAGGC 6264 68 2.39e-07 CGACCGATGA GAGACGATGCTG CATCCTATAT 24880 38 7.59e-07 CCATTAAAGA GTGACGATGAAG GTTTAGTATC 5265 464 9.23e-07 GACGCACGAG CAGCCGATGATG CTTTCGTCGG bd1109 448 1.05e-06 CAGTGAAGTC AAGACGATGATG AATGTTGGCT 28704 284 3.53e-06 ACCACCACCG CAGCCGATGCAG CTGCACAACC 268552 464 4.06e-06 AATGTTCAGA CAGATGATGAAG GAGGAATGAG 32252 75 8.54e-06 GGAAGAGTAG CAGACGAGGATC CTCCTGGTAT 28241 131 8.54e-06 GAGGTCGGCA CTGACGAGGCAG ATCGCGAAGA 268875 216 1.05e-05 GGGGCGGAGA GTGACGGTGCAG GTTATGCCGT 263534 355 1.05e-05 TGCGCAGACT GACACGCTGATG CAACCAGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 5293 6.1e-08 69_[+2]_419 41530 6.1e-08 121_[+2]_367 261636 6.1e-08 11_[+2]_477 6264 2.4e-07 67_[+2]_421 24880 7.6e-07 37_[+2]_451 5265 9.2e-07 463_[+2]_25 bd1109 1.1e-06 447_[+2]_41 28704 3.5e-06 283_[+2]_205 268552 4.1e-06 463_[+2]_25 32252 8.5e-06 74_[+2]_414 28241 8.5e-06 130_[+2]_358 268875 1.1e-05 215_[+2]_273 263534 1.1e-05 354_[+2]_134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=12 seqs=13 5293 ( 70) GAGACGATGATG 1 41530 ( 122) GAGACGATGATG 1 261636 ( 12) GAGACGATGATG 1 6264 ( 68) GAGACGATGCTG 1 24880 ( 38) GTGACGATGAAG 1 5265 ( 464) CAGCCGATGATG 1 bd1109 ( 448) AAGACGATGATG 1 28704 ( 284) CAGCCGATGCAG 1 268552 ( 464) CAGATGATGAAG 1 32252 ( 75) CAGACGAGGATC 1 28241 ( 131) CTGACGAGGCAG 1 268875 ( 216) GTGACGGTGCAG 1 263534 ( 355) GACACGCTGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 14670 bayes= 11.304 E= 6.3e-003 -178 69 117 -1035 154 -1035 -1035 -16 -1035 -163 195 -1035 167 -63 -1035 -1035 -1035 195 -1035 -174 -1035 -1035 206 -1035 167 -163 -163 -1035 -1035 -1035 -63 172 -1035 -1035 206 -1035 139 37 -1035 -1035 54 -1035 -1035 126 -1035 -163 195 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 13 E= 6.3e-003 0.076923 0.384615 0.538462 0.000000 0.769231 0.000000 0.000000 0.230769 0.000000 0.076923 0.923077 0.000000 0.846154 0.153846 0.000000 0.000000 0.000000 0.923077 0.000000 0.076923 0.000000 0.000000 1.000000 0.000000 0.846154 0.076923 0.076923 0.000000 0.000000 0.000000 0.153846 0.846154 0.000000 0.000000 1.000000 0.000000 0.692308 0.307692 0.000000 0.000000 0.384615 0.000000 0.000000 0.615385 0.000000 0.076923 0.923077 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [GC][AT]GACGATG[AC][TA]G -------------------------------------------------------------------------------- Time 13.52 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 20 llr = 214 E-value = 3.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :5:2:12::3:335:6 pos.-specific C 7238:93a366631a1 probability G :11::::::21222:1 matrix T 337:a:5:714:33:2 bits 2.1 * * 1.9 * * * 1.7 ** * * 1.4 ** * * Relative 1.2 * *** * * Entropy 1.0 * *** ** * (15.4 bits) 0.8 * **** ** * * 0.6 * **** ** ** * 0.4 * ********** *** 0.2 ************ *** 0.0 ---------------- Multilevel CATCTCTCTCCCAACA consensus TTCA C CATACT T sequence A GT G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 20069 476 1.17e-08 TCACCATTTC CATCTCTCTCCGCACA ATAAACAGC 41530 472 2.35e-07 CATTCCTCCC CCTCTCTCTCCACTCA CCATACTGCA 268552 204 5.12e-07 CAGTAGCAGG CATCTCTCTATCGGCA GTTGGCCTCG 40995 471 6.79e-07 ACGCACCAAA CTCCTCACTCTCAACA CTCCACTCCC 23855 452 1.16e-06 ATCTAATACT CATATCCCTCCCCTCT CCAAATCACA 5334 337 1.32e-06 AATTTGAATG CAGCTCTCTCCGAACA CGAAGACGTG 33046 152 1.90e-06 ATGGTGTGCT CACCTCTCTATCGGCA CGGAACTTGC 39622 387 2.67e-06 TGTTCATTGT CACCTACCTCCCATCA TTGGGATCCT 15027 108 2.98e-06 TGTCCACTCA TATCTCACCCTATACA GGATCGGAGA 31424 444 3.32e-06 ACCCAACAAC CATCTCACTGCCGACG ACAGCCGACC 28241 204 3.68e-06 AAGGAAGTTC CGTCTCTCTGTACACA GGAATCATAG 23184 423 5.48e-06 TAGAGACCAA TATCTCCCCCCAGTCT CCACCCACGC 6264 408 7.91e-06 TGACACTACA CTTCTCTCTCTGCGCC TTCTCTCCCA 261636 323 7.91e-06 ACCTTTGACG TTTCTATCTCCGTACA TTGGGGAGAG 1770 171 1.02e-05 GTTGGAGGGC TCTCTCCCTGCCTTCT CTGAGCAAAG 25812 189 1.11e-05 TCCCTTCCCA CCTCTCCCTCCCTCCC TCACACATAA 23957 134 2.48e-05 TTGCTAAAGA CATCTCTCCTGAAACA AATTGAGCTA 22610 474 2.99e-05 TCTAACCCAT TTCATCTCCATCTTCA TCTCCTTTTG bd1109 270 3.38e-05 AACAAATCAT TTCATCCCCACCAACT CCATCACACT 28704 214 4.01e-05 CTCCATCCTG CGTATCACCACCAACG CTCGTGATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 20069 1.2e-08 475_[+3]_9 41530 2.4e-07 471_[+3]_13 268552 5.1e-07 203_[+3]_281 40995 6.8e-07 470_[+3]_14 23855 1.2e-06 451_[+3]_33 5334 1.3e-06 336_[+3]_148 33046 1.9e-06 151_[+3]_333 39622 2.7e-06 386_[+3]_98 15027 3e-06 107_[+3]_377 31424 3.3e-06 443_[+3]_41 28241 3.7e-06 203_[+3]_281 23184 5.5e-06 422_[+3]_62 6264 7.9e-06 407_[+3]_77 261636 7.9e-06 322_[+3]_162 1770 1e-05 170_[+3]_314 25812 1.1e-05 188_[+3]_296 23957 2.5e-05 133_[+3]_351 22610 3e-05 473_[+3]_11 bd1109 3.4e-05 269_[+3]_215 28704 4e-05 213_[+3]_271 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=20 20069 ( 476) CATCTCTCTCCGCACA 1 41530 ( 472) CCTCTCTCTCCACTCA 1 268552 ( 204) CATCTCTCTATCGGCA 1 40995 ( 471) CTCCTCACTCTCAACA 1 23855 ( 452) CATATCCCTCCCCTCT 1 5334 ( 337) CAGCTCTCTCCGAACA 1 33046 ( 152) CACCTCTCTATCGGCA 1 39622 ( 387) CACCTACCTCCCATCA 1 15027 ( 108) TATCTCACCCTATACA 1 31424 ( 444) CATCTCACTGCCGACG 1 28241 ( 204) CGTCTCTCTGTACACA 1 23184 ( 423) TATCTCCCCCCAGTCT 1 6264 ( 408) CTTCTCTCTCTGCGCC 1 261636 ( 323) TTTCTATCTCCGTACA 1 1770 ( 171) TCTCTCCCTGCCTTCT 1 25812 ( 189) CCTCTCCCTCCCTCCC 1 23957 ( 134) CATCTCTCCTGAAACA 1 22610 ( 474) TTCATCTCCATCTTCA 1 bd1109 ( 270) TTCATCCCCACCAACT 1 28704 ( 214) CGTATCACCACCAACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 14550 bayes= 10.4492 E= 3.0e-002 -1097 155 -1097 22 92 -67 -126 -4 -1097 7 -225 144 -41 174 -1097 -1097 -1097 -1097 -1097 196 -140 191 -1097 -1097 -41 33 -1097 96 -1097 207 -1097 -1097 -1097 33 -1097 144 -8 120 -67 -236 -1097 133 -225 44 -8 120 -26 -1097 18 7 -26 -4 92 -225 -67 22 -1097 207 -1097 -1097 118 -125 -126 -36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 20 E= 3.0e-002 0.000000 0.700000 0.000000 0.300000 0.500000 0.150000 0.100000 0.250000 0.000000 0.250000 0.050000 0.700000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.100000 0.900000 0.000000 0.000000 0.200000 0.300000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.300000 0.000000 0.700000 0.250000 0.550000 0.150000 0.050000 0.000000 0.600000 0.050000 0.350000 0.250000 0.550000 0.200000 0.000000 0.300000 0.250000 0.200000 0.250000 0.500000 0.050000 0.150000 0.300000 0.000000 1.000000 0.000000 0.000000 0.600000 0.100000 0.100000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CT][AT][TC][CA]TC[TCA]C[TC][CA][CT][CAG][ACTG][AT]C[AT] -------------------------------------------------------------------------------- Time 20.12 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 11397 9.08e-01 500 15027 9.28e-05 107_[+3(2.98e-06)]_54_\ [+1(8.65e-05)]_6_[+1(5.35e-06)]_275 1770 5.47e-04 126_[+1(1.30e-05)]_23_\ [+3(1.02e-05)]_314 20069 1.91e-10 337_[+1(5.55e-10)]_117_\ [+3(1.17e-08)]_9 21865 2.75e-04 57_[+1(2.88e-07)]_422 22610 1.71e-01 473_[+3(2.99e-05)]_11 23184 1.15e-06 56_[+1(6.40e-09)]_345_\ [+3(5.48e-06)]_62 23855 4.89e-05 316_[+1(4.21e-06)]_114_\ [+3(1.16e-06)]_33 23957 3.24e-02 133_[+3(2.48e-05)]_351 24248 8.01e-03 129_[+1(1.83e-05)]_350 24880 6.29e-05 37_[+2(7.59e-07)]_234_\ [+1(4.56e-06)]_196 25812 5.36e-04 188_[+3(1.11e-05)]_73_\ [+1(6.76e-06)]_202 261636 3.73e-10 11_[+2(6.07e-08)]_299_\ [+3(7.91e-06)]_97_[+1(1.66e-08)]_44 263534 2.56e-03 70_[+1(1.83e-05)]_263_\ [+2(1.05e-05)]_134 268552 3.68e-08 127_[+1(4.58e-05)]_55_\ [+3(5.12e-07)]_147_[+1(5.52e-07)]_76_[+2(4.06e-06)]_25 268875 2.16e-04 172_[+1(2.13e-06)]_22_\ [+2(1.05e-05)]_273 269908 8.77e-01 500 28241 2.42e-07 82_[+1(2.88e-07)]_27_[+2(8.54e-06)]_\ 61_[+3(3.68e-06)]_281 28704 2.03e-03 213_[+3(4.01e-05)]_54_\ [+2(3.53e-06)]_205 31424 2.09e-06 351_[+1(1.66e-08)]_71_\ [+3(3.32e-06)]_41 32252 1.85e-03 74_[+2(8.54e-06)]_20_[+1(1.40e-05)]_\ 373 33046 1.56e-06 22_[+1(1.43e-07)]_108_\ [+3(1.90e-06)]_333 39622 2.94e-05 174_[+1(1.94e-06)]_191_\ [+3(2.67e-06)]_98 40995 1.01e-02 470_[+3(6.79e-07)]_14 41530 6.08e-09 12_[+1(1.13e-05)]_88_[+2(6.07e-08)]_\ 200_[+3(1.68e-06)]_122_[+3(2.35e-07)]_13 5265 4.18e-04 31_[+1(2.23e-05)]_411_\ [+2(9.23e-07)]_25 5293 1.28e-03 69_[+2(6.07e-08)]_93_[+2(8.13e-05)]_\ 314 5334 1.67e-05 233_[+1(9.16e-07)]_82_\ [+3(1.32e-06)]_148 6264 3.00e-05 67_[+2(2.39e-07)]_328_\ [+3(7.91e-06)]_77 bd1109 3.29e-07 97_[+1(3.60e-07)]_151_\ [+3(3.38e-05)]_162_[+2(1.05e-06)]_41 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************