******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/60/60.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 24363 1.0000 500 24505 1.0000 500 24959 1.0000 500 2537 1.0000 500 25399 1.0000 500 261688 1.0000 500 262675 1.0000 500 263535 1.0000 500 268718 1.0000 500 269393 1.0000 500 3215 1.0000 500 33500 1.0000 500 33558 1.0000 500 3438 1.0000 500 34554 1.0000 500 36684 1.0000 500 36929 1.0000 500 38513 1.0000 500 4126 1.0000 500 42971 1.0000 500 4387 1.0000 500 7310 1.0000 500 8808 1.0000 500 8853 1.0000 500 9135 1.0000 500 ThpsCp008 1.0000 500 ThpsCp009 1.0000 500 ThpsCp028 1.0000 500 ThpsCp029 1.0000 500 ThpsCp030 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/60/60.seqs.fa -oc motifs/60 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 30 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 15000 N= 30 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.283 C 0.217 G 0.224 T 0.276 Background letter frequencies (from dataset with add-one prior applied): A 0.283 C 0.217 G 0.224 T 0.276 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 17 llr = 228 E-value = 4.7e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 15:132:2:1:1555:5256: pos.-specific C 71552662a3592559575:9 probability G 2112:::::22:1::1:11:: matrix T :3425246:53:2::::1:41 bits 2.2 * 2.0 * 1.8 * * * 1.5 * * * * Relative 1.3 * * * * Entropy 1.1 * * * * **** * (19.3 bits) 0.9 * ** * * ***** ** 0.7 * * ** * ** ******** 0.4 * * ***** ** ******** 0.2 ********************* 0.0 --------------------- Multilevel CACCTCCTCTCCAAACACAAC consensus GTTTA TC CT TCC C CT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 25399 414 1.76e-09 CTCGTCCACA CTCCTCCTCACCAACCCCAAC GCCACATCAT 268718 436 7.32e-09 CAAGTATCTA CTCCTCCTCTTCGCCCCCCTC CTTCCCGAGG 4387 381 2.19e-08 ACAACACCAC CACCATCTCGCCTCACACCTC TCACCACCAA 33558 248 3.60e-08 GACACTTCGT CACCCCCCCCCCCCCCCGAAC AGCTCACAGC 36929 380 4.06e-08 CGGAAGCTCC CACCATCTCTGCCACCCCATC ATCATTGTCT 3215 438 4.06e-08 TTCAAGTCTC GAGGACCTCCCCAAACACCAC CACCGAATCA 4126 425 1.23e-07 AGGTCAAATG GACAACTTCGTCACCCACCAC AGCGTCGGGA 24959 372 1.37e-07 GTTGAACCGT CGGCTCCTCTCCAAAGCCATC TACCATCAGT 8853 458 1.85e-07 CCTCGGTACA CATTCCTCCTCAACCCACAAC CTCCTCACAT 36684 273 2.71e-07 GACACCTTTC CGCCTTCACCTCCAACACAAC ACCGTGAGTG 42971 163 3.26e-07 AGCCACAGCC ATTCTACTCGCCACACACAAC AACGATAGTA 3438 451 9.69e-07 CACCATCGTC GACGTCCACCCCTAACCTCTC TCGAACTATC ThpsCp029 240 1.13e-06 AGAAGTTATA CTTTTATTCTTAAAACACCAC CTGCATCTGT 33500 465 1.22e-06 TGCCCCATTC CTTAACTCCTGCAAACCAAAC AATCTCAACA 38513 368 2.00e-06 TCCCTCCTCT CATTCCTTCTCCAACGCAGAC AAAGAAGAAG 9135 141 3.78e-06 TGTCCCCCCT CATTCATCCTTCTCCCACCAT TGAACCTTCT 34554 430 4.51e-06 CCAAAGGGAA GCCGTCCACCGCTCACAACTC ACAAACCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 25399 1.8e-09 413_[+1]_66 268718 7.3e-09 435_[+1]_44 4387 2.2e-08 380_[+1]_99 33558 3.6e-08 247_[+1]_232 36929 4.1e-08 379_[+1]_100 3215 4.1e-08 437_[+1]_42 4126 1.2e-07 424_[+1]_55 24959 1.4e-07 371_[+1]_108 8853 1.8e-07 457_[+1]_22 36684 2.7e-07 272_[+1]_207 42971 3.3e-07 162_[+1]_317 3438 9.7e-07 450_[+1]_29 ThpsCp029 1.1e-06 239_[+1]_240 33500 1.2e-06 464_[+1]_15 38513 2e-06 367_[+1]_112 9135 3.8e-06 140_[+1]_339 34554 4.5e-06 429_[+1]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=17 25399 ( 414) CTCCTCCTCACCAACCCCAAC 1 268718 ( 436) CTCCTCCTCTTCGCCCCCCTC 1 4387 ( 381) CACCATCTCGCCTCACACCTC 1 33558 ( 248) CACCCCCCCCCCCCCCCGAAC 1 36929 ( 380) CACCATCTCTGCCACCCCATC 1 3215 ( 438) GAGGACCTCCCCAAACACCAC 1 4126 ( 425) GACAACTTCGTCACCCACCAC 1 24959 ( 372) CGGCTCCTCTCCAAAGCCATC 1 8853 ( 458) CATTCCTCCTCAACCCACAAC 1 36684 ( 273) CGCCTTCACCTCCAACACAAC 1 42971 ( 163) ATTCTACTCGCCACACACAAC 1 3438 ( 451) GACGTCCACCCCTAACCTCTC 1 ThpsCp029 ( 240) CTTTTATTCTTAAAACACCAC 1 33500 ( 465) CTTAACTCCTGCAAACCAAAC 1 38513 ( 368) CATTCCTTCTCCAACGCAGAC 1 9135 ( 141) CATTCATCCTTCTCCCACCAT 1 34554 ( 430) GCCGTCCACCGCTCACAACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 14400 bayes= 9.79424 E= 4.7e-007 -226 170 7 -1073 90 -188 -93 9 -1073 129 -93 36 -126 112 -35 -23 6 12 -1073 77 -68 158 -1073 -64 -1073 158 -1073 36 -68 12 -1073 109 -1073 220 -1073 -1073 -226 44 -35 77 -1073 129 -35 9 -126 202 -1073 -1073 90 -30 -193 -23 90 112 -1073 -1073 90 112 -1073 -1073 -1073 202 -93 -1073 90 112 -1073 -1073 -68 170 -193 -223 73 112 -193 -1073 119 -1073 -1073 36 -1073 212 -1073 -223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 17 E= 4.7e-007 0.058824 0.705882 0.235294 0.000000 0.529412 0.058824 0.117647 0.294118 0.000000 0.529412 0.117647 0.352941 0.117647 0.470588 0.176471 0.235294 0.294118 0.235294 0.000000 0.470588 0.176471 0.647059 0.000000 0.176471 0.000000 0.647059 0.000000 0.352941 0.176471 0.235294 0.000000 0.588235 0.000000 1.000000 0.000000 0.000000 0.058824 0.294118 0.176471 0.470588 0.000000 0.529412 0.176471 0.294118 0.117647 0.882353 0.000000 0.000000 0.529412 0.176471 0.058824 0.235294 0.529412 0.470588 0.000000 0.000000 0.529412 0.470588 0.000000 0.000000 0.000000 0.882353 0.117647 0.000000 0.529412 0.470588 0.000000 0.000000 0.176471 0.705882 0.058824 0.058824 0.470588 0.470588 0.058824 0.000000 0.647059 0.000000 0.000000 0.352941 0.000000 0.941176 0.000000 0.058824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CG][AT][CT][CT][TAC]C[CT][TC]C[TC][CT]C[AT][AC][AC]C[AC]C[AC][AT]C -------------------------------------------------------------------------------- Time 6.82 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 13 llr = 172 E-value = 7.7e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 16::7::8::2215:: pos.-specific C 1:7:24:281:5:142 probability G 84:a::a::9:29158 matrix T ::3:26:12:81:32: bits 2.2 * * 2.0 * * 1.8 * * * * 1.5 * * * * Relative 1.3 * * * ** * * Entropy 1.1 * ** ** *** * * (19.1 bits) 0.9 **** ****** * * 0.7 *********** * ** 0.4 *********** * ** 0.2 **************** 0.0 ---------------- Multilevel GACGATGACGTCGAGG consensus GT C T AA TCC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 2537 439 8.53e-09 ATTCGAGACT GACGACGACGACGAGG CTTTTATCTA 38513 309 8.91e-08 GCGCAGACAC GACGACGATGACGACG ACACGACGCT 36684 177 8.91e-08 GAAGGGGGGG GGCGATGACGTAGTTG GCGCCAAAAC 262675 138 1.19e-07 GATTGATTGG GATGACGACGAGGAGG AACTTTCGGA 8808 176 1.43e-07 CGTGTGGTAT GACGATGACCTCGAGC ATTAACGCGA 7310 131 1.60e-07 TGTGGATGAT GGCGATGCCGTTGAGG TTAAGGAATT 8853 434 1.96e-07 CGACGCGGCC GACGCCGACGTAGACC TCGGTACACA 261688 228 2.70e-07 GCTCAAACCG GATGATGATGTCGCGG ACGATGTCGA 4126 286 6.24e-07 CGTCGTCGTT GGCGTCGTCGTCGTCG TCGTCGGGTT 33500 385 1.03e-06 ACTCAAATTT GGTGCTGACGTAGGCG CTGCATGTCG 33558 89 1.44e-06 GTATAGCTGA GATGATGATGTGAAGG TACGAGAGAG 42971 102 1.54e-06 GTCATCCCCC AGCGATGCCGTCGTCC ACCAACACAC 24959 350 2.13e-06 TCCCAAACAA CACGTTGACGTGGTTG AACCGTCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2537 8.5e-09 438_[+2]_46 38513 8.9e-08 308_[+2]_176 36684 8.9e-08 176_[+2]_308 262675 1.2e-07 137_[+2]_347 8808 1.4e-07 175_[+2]_309 7310 1.6e-07 130_[+2]_354 8853 2e-07 433_[+2]_51 261688 2.7e-07 227_[+2]_257 4126 6.2e-07 285_[+2]_199 33500 1e-06 384_[+2]_100 33558 1.4e-06 88_[+2]_396 42971 1.5e-06 101_[+2]_383 24959 2.1e-06 349_[+2]_135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=13 2537 ( 439) GACGACGACGACGAGG 1 38513 ( 309) GACGACGATGACGACG 1 36684 ( 177) GGCGATGACGTAGTTG 1 262675 ( 138) GATGACGACGAGGAGG 1 8808 ( 176) GACGATGACCTCGAGC 1 7310 ( 131) GGCGATGCCGTTGAGG 1 8853 ( 434) GACGCCGACGTAGACC 1 261688 ( 228) GATGATGATGTCGCGG 1 4126 ( 286) GGCGTCGTCGTCGTCG 1 33500 ( 385) GGTGCTGACGTAGGCG 1 33558 ( 89) GATGATGATGTGAAGG 1 42971 ( 102) AGCGATGCCGTCGTCC 1 24959 ( 350) CACGTTGACGTGGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 14550 bayes= 11.2921 E= 7.7e-004 -188 -149 191 -1035 112 -1035 78 -1035 -1035 167 -1035 16 -1035 -1035 215 -1035 129 -49 -1035 -84 -1035 83 -1035 116 -1035 -1035 215 -1035 144 -49 -1035 -184 -1035 183 -1035 -26 -1035 -149 204 -1035 -29 -1035 -1035 148 -29 109 4 -184 -188 -1035 204 -1035 93 -149 -154 16 -1035 83 104 -84 -1035 9 178 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 13 E= 7.7e-004 0.076923 0.076923 0.846154 0.000000 0.615385 0.000000 0.384615 0.000000 0.000000 0.692308 0.000000 0.307692 0.000000 0.000000 1.000000 0.000000 0.692308 0.153846 0.000000 0.153846 0.000000 0.384615 0.000000 0.615385 0.000000 0.000000 1.000000 0.000000 0.769231 0.153846 0.000000 0.076923 0.000000 0.769231 0.000000 0.230769 0.000000 0.076923 0.923077 0.000000 0.230769 0.000000 0.000000 0.769231 0.230769 0.461538 0.230769 0.076923 0.076923 0.000000 0.923077 0.000000 0.538462 0.076923 0.076923 0.307692 0.000000 0.384615 0.461538 0.153846 0.000000 0.230769 0.769231 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- G[AG][CT]GA[TC]GA[CT]G[TA][CAG]G[AT][GC][GC] -------------------------------------------------------------------------------- Time 13.36 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 15 sites = 10 llr = 137 E-value = 7.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 1:a::73:63:8::9 pos.-specific C 68:192:a138::a: probability G 32::11::1122::: matrix T :::9::7:23::a:1 bits 2.2 * * 2.0 * * 1.8 * * * ** 1.5 ** * * * ** Relative 1.3 **** * * *** Entropy 1.1 **** * ***** (19.7 bits) 0.9 ******** ***** 0.7 ******** ***** 0.4 ******** ***** 0.2 ********* ***** 0.0 --------------- Multilevel CCATCATCAACATCA consensus GG CA TCGG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 7310 440 7.83e-09 GAAAGCACAG GCATCATCATCATCA TCGGCATACC 24505 13 2.68e-08 GGTCGCGATG CCATCATCAAGATCA TGCCCGATCA 25399 336 1.29e-07 TGTTGTTGTT CCATCCTCCACATCA ACCGTATCCC 24959 427 1.67e-07 CCTACCATTA CCATCAACACCATCT CATCATCGCA 36929 470 2.63e-07 AAACAGAAGT AGATCATCACCATCA GCAAAGTCTC 268718 291 2.63e-07 TGGTGCTGTG CCATCGTCAAGATCA GCACTAGGAG 42971 270 3.67e-07 TGTCGGCGGT GCATCATCGTCGTCA TGCTGCGTTT 33558 378 5.25e-07 GATAGATACA CCATCCACTGCATCA TATCTTCGTA ThpsCp009 27 6.20e-07 TAATAATTCG GGATCAACTTCATCA AGACTATTTA 2537 376 1.34e-06 AATGCTGGTT CCACGATCACCGTCA CGTGAAGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 7310 7.8e-09 439_[+3]_46 24505 2.7e-08 12_[+3]_473 25399 1.3e-07 335_[+3]_150 24959 1.7e-07 426_[+3]_59 36929 2.6e-07 469_[+3]_16 268718 2.6e-07 290_[+3]_195 42971 3.7e-07 269_[+3]_216 33558 5.2e-07 377_[+3]_108 ThpsCp009 6.2e-07 26_[+3]_459 2537 1.3e-06 375_[+3]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=15 seqs=10 7310 ( 440) GCATCATCATCATCA 1 24505 ( 13) CCATCATCAAGATCA 1 25399 ( 336) CCATCCTCCACATCA 1 24959 ( 427) CCATCAACACCATCT 1 36929 ( 470) AGATCATCACCATCA 1 268718 ( 291) CCATCGTCAAGATCA 1 42971 ( 270) GCATCATCGTCGTCA 1 33558 ( 378) CCATCCACTGCATCA 1 ThpsCp009 ( 27) GGATCAACTTCATCA 1 2537 ( 376) CCACGATCACCGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 14580 bayes= 11.4527 E= 7.5e-003 -150 147 42 -997 -997 188 -17 -997 182 -997 -997 -997 -997 -112 -997 171 -997 205 -116 -997 131 -12 -116 -997 8 -997 -997 134 -997 220 -997 -997 108 -112 -116 -46 8 47 -116 12 -997 188 -17 -997 150 -997 -17 -997 -997 -997 -997 186 -997 220 -997 -997 167 -997 -997 -146 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 10 E= 7.5e-003 0.100000 0.600000 0.300000 0.000000 0.000000 0.800000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.900000 0.100000 0.000000 0.700000 0.200000 0.100000 0.000000 0.300000 0.000000 0.000000 0.700000 0.000000 1.000000 0.000000 0.000000 0.600000 0.100000 0.100000 0.200000 0.300000 0.300000 0.100000 0.300000 0.000000 0.800000 0.200000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.000000 0.000000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CG][CG]ATC[AC][TA]C[AT][ACT][CG][AG]TCA -------------------------------------------------------------------------------- Time 19.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 24363 2.04e-01 500 24505 6.09e-04 12_[+3(2.68e-08)]_473 24959 2.00e-09 349_[+2(2.13e-06)]_6_[+1(1.37e-07)]_\ 34_[+3(1.67e-07)]_59 2537 2.33e-07 375_[+3(1.34e-06)]_48_\ [+2(8.53e-09)]_46 25399 2.62e-09 221_[+3(6.93e-05)]_99_\ [+3(1.29e-07)]_63_[+1(1.76e-09)]_66 261688 3.92e-03 227_[+2(2.70e-07)]_124_\ [+2(6.46e-05)]_117 262675 2.27e-03 137_[+2(1.19e-07)]_347 263535 1.94e-01 500 268718 3.42e-08 290_[+3(2.63e-07)]_130_\ [+1(7.32e-09)]_44 269393 6.28e-01 500 3215 2.81e-04 437_[+1(4.06e-08)]_42 33500 2.74e-05 384_[+2(1.03e-06)]_64_\ [+1(1.22e-06)]_15 33558 1.17e-09 88_[+2(1.44e-06)]_143_\ [+1(3.60e-08)]_109_[+3(5.25e-07)]_108 3438 2.62e-04 450_[+1(9.69e-07)]_29 34554 1.48e-03 429_[+1(4.51e-06)]_50 36684 1.95e-07 176_[+2(8.91e-08)]_80_\ [+1(2.71e-07)]_207 36929 1.03e-07 379_[+1(4.06e-08)]_69_\ [+3(2.63e-07)]_16 38513 2.42e-06 308_[+2(8.91e-08)]_1_[+2(1.68e-05)]_\ 26_[+1(2.00e-06)]_112 4126 8.80e-07 285_[+2(6.24e-07)]_123_\ [+1(1.23e-07)]_55 42971 6.84e-09 30_[+1(9.57e-05)]_50_[+2(1.54e-06)]_\ 45_[+1(3.26e-07)]_86_[+3(3.67e-07)]_216 4387 2.15e-05 17_[+1(9.89e-06)]_342_\ [+1(2.19e-08)]_99 7310 2.95e-08 130_[+2(1.60e-07)]_293_\ [+3(7.83e-09)]_46 8808 1.45e-04 175_[+2(1.43e-07)]_309 8853 1.17e-06 433_[+2(1.96e-07)]_8_[+1(1.85e-07)]_\ 22 9135 1.20e-02 140_[+1(3.78e-06)]_339 ThpsCp008 7.82e-01 500 ThpsCp009 1.22e-02 26_[+3(6.20e-07)]_459 ThpsCp028 8.57e-01 500 ThpsCp029 2.22e-03 239_[+1(1.13e-06)]_240 ThpsCp030 6.65e-01 500 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************