******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/63/63.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 23329 1.0000 500 5317 1.0000 500 6610 1.0000 500 bd1013 1.0000 500 bd1243 1.0000 500 bd1267 1.0000 500 bd1435 1.0000 500 bd997 1.0000 500 ThpsCp024 1.0000 500 ThpsCp025 1.0000 500 ThpsCp033 1.0000 500 ThpsCp034 1.0000 500 ThpsCp036 1.0000 500 ThpsCp038 1.0000 500 ThpsCp057 1.0000 500 ThpsCp079 1.0000 500 ThpsCp080 1.0000 500 ThpsCp081 1.0000 500 ThpsCp135 1.0000 500 ThpsCp136 1.0000 500 ThpsCp137 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/63/63.seqs.fa -oc motifs/63 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 21 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 10500 N= 21 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.374 C 0.140 G 0.156 T 0.330 Background letter frequencies (from dataset with add-one prior applied): A 0.374 C 0.140 G 0.156 T 0.330 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 16 llr = 239 E-value = 9.8e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A ::5:4::41::312:1::3:: pos.-specific C 11313:a3:1213163:651: probability G 2426:8:13:3646:49117: matrix T 74:332:3696:31421322a bits 2.8 * 2.6 * 2.3 * 2.0 * * Relative 1.7 ** * * Entropy 1.4 ** * * ** (21.6 bits) 1.1 * ** * * ** ** 0.9 ** * ** * * ** ** ** 0.6 **** ** ************* 0.3 ********************* 0.0 --------------------- Multilevel TGAGAGCATTTGGGCGGCCGT consensus TCTC CG GAC TC TA sequence T T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- ThpsCp136 356 3.72e-10 AGGAAAAATT TTAGAGCATTTACGTGGCCGT AAAACTATTG ThpsCp135 81 3.72e-10 AGGAAAAATT TTAGAGCATTTACGTGGCCGT AAAACTATTG ThpsCp081 112 3.72e-10 AGGAAAAATT TTAGAGCATTTACGTGGCCGT AAAACTATTG ThpsCp080 371 3.72e-10 AGGAAAAATT TTAGAGCATTTACGTGGCCGT AAAACTATTG 6610 447 3.49e-09 GTTACCGTCT TGCGCGCCGTGGTGCGTCACT GTGCTCGAGC 23329 347 3.49e-09 GTTACCGTCT TGCGCGCCGTGGTGCGTCACT GTGCTCGAGC ThpsCp038 364 6.99e-08 GTAAAATTCT TCCTCGCCGTGCGACAGGCGT AACAGTACAA bd1435 345 6.99e-08 GTAAAATTCT TCCTCGCCGTGCGACAGGCGT AACAGTACAA ThpsCp036 27 1.01e-07 CAGCTAATTT TGATTTCTTTCGGGCTGCTGT ATTTTTATGA bd1243 16 1.01e-07 CAGCTAATTT TGATTTCTTTCGGGCTGCTGT ATTTTTATGA ThpsCp137 236 3.05e-07 CTTGGATTAG GGGCTGCTTTTGTTTCGTCGT CAGCGATAGA ThpsCp079 238 3.05e-07 CTTGGATTAG GGGCTGCTTTTGTTTCGTCGT CAGCGATAGA ThpsCp033 84 5.23e-07 AAAATGCACT CTAGAGCAACTGGGCCGTATT CATTGGTAAC bd997 85 5.23e-07 AAAATGCACT CTAGAGCAACTGGGCCGTATT CATTGGTAAC bd1013 319 5.23e-07 TAGATCAAAG TGGTATCCGTTACCCTGCTGT AGTTCGATTT ThpsCp057 259 1.67e-06 CAAGGTTGAT GTCGCGCGTTCGAATCGCGTT GCCCGCTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- ThpsCp136 3.7e-10 355_[+1]_124 ThpsCp135 3.7e-10 80_[+1]_399 ThpsCp081 3.7e-10 111_[+1]_368 ThpsCp080 3.7e-10 370_[+1]_109 6610 3.5e-09 446_[+1]_33 23329 3.5e-09 346_[+1]_133 ThpsCp038 7e-08 363_[+1]_116 bd1435 7e-08 344_[+1]_135 ThpsCp036 1e-07 26_[+1]_453 bd1243 1e-07 15_[+1]_464 ThpsCp137 3e-07 235_[+1]_244 ThpsCp079 3e-07 237_[+1]_242 ThpsCp033 5.2e-07 83_[+1]_396 bd997 5.2e-07 84_[+1]_395 bd1013 5.2e-07 318_[+1]_161 ThpsCp057 1.7e-06 258_[+1]_221 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=16 ThpsCp136 ( 356) TTAGAGCATTTACGTGGCCGT 1 ThpsCp135 ( 81) TTAGAGCATTTACGTGGCCGT 1 ThpsCp081 ( 112) TTAGAGCATTTACGTGGCCGT 1 ThpsCp080 ( 371) TTAGAGCATTTACGTGGCCGT 1 6610 ( 447) TGCGCGCCGTGGTGCGTCACT 1 23329 ( 347) TGCGCGCCGTGGTGCGTCACT 1 ThpsCp038 ( 364) TCCTCGCCGTGCGACAGGCGT 1 bd1435 ( 345) TCCTCGCCGTGCGACAGGCGT 1 ThpsCp036 ( 27) TGATTTCTTTCGGGCTGCTGT 1 bd1243 ( 16) TGATTTCTTTCGGGCTGCTGT 1 ThpsCp137 ( 236) GGGCTGCTTTTGTTTCGTCGT 1 ThpsCp079 ( 238) GGGCTGCTTTTGTTTCGTCGT 1 ThpsCp033 ( 84) CTAGAGCAACTGGGCCGTATT 1 bd997 ( 85) CTAGAGCAACTGGGCCGTATT 1 bd1013 ( 319) TGGTATCCGTTACCCTGCTGT 1 ThpsCp057 ( 259) GTCGCGCGTTCGAATCGCGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 10080 bayes= 10.6202 E= 9.8e-019 -1064 -16 26 106 -1064 -16 149 41 42 116 26 -1064 -1064 -16 185 -8 22 116 -1064 -40 -1064 -1064 238 -81 -1064 284 -1064 -1064 0 116 -132 -40 -158 -1064 100 77 -1064 -16 -1064 141 -1064 42 68 77 -26 -16 185 -1064 -258 116 126 -40 -100 -116 200 -140 -1064 201 -1064 41 -158 116 126 -81 -1064 -1064 249 -140 -1064 216 -32 -40 -58 184 -132 -81 -1064 -16 214 -81 -1064 -1064 -1064 160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 16 E= 9.8e-019 0.000000 0.125000 0.187500 0.687500 0.000000 0.125000 0.437500 0.437500 0.500000 0.312500 0.187500 0.000000 0.000000 0.125000 0.562500 0.312500 0.437500 0.312500 0.000000 0.250000 0.000000 0.000000 0.812500 0.187500 0.000000 1.000000 0.000000 0.000000 0.375000 0.312500 0.062500 0.250000 0.125000 0.000000 0.312500 0.562500 0.000000 0.125000 0.000000 0.875000 0.000000 0.187500 0.250000 0.562500 0.312500 0.125000 0.562500 0.000000 0.062500 0.312500 0.375000 0.250000 0.187500 0.062500 0.625000 0.125000 0.000000 0.562500 0.000000 0.437500 0.125000 0.312500 0.375000 0.187500 0.000000 0.000000 0.875000 0.125000 0.000000 0.625000 0.125000 0.250000 0.250000 0.500000 0.062500 0.187500 0.000000 0.125000 0.687500 0.187500 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- T[GT][AC][GT][ACT]GC[ACT][TG]T[TG][GA][GCT]G[CT][GC]G[CT][CA]GT -------------------------------------------------------------------------------- Time 3.45 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 11 llr = 179 E-value = 5.7e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 7:78:25:a4::::59 pos.-specific C 3a:22::a::6:6a3: probability G ::::882::1:9::2: matrix T ::3:::4::5414::1 bits 2.8 * * * 2.6 * * * 2.3 * * * * 2.0 * * * * * Relative 1.7 * ** * * * Entropy 1.4 * ** ** **** (23.4 bits) 1.1 * ** ** **** * 0.9 ** *** ** **** * 0.6 ****** ** ****** 0.3 **************** 0.0 ---------------- Multilevel ACAAGGACATCGCCAA consensus C T T AT T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- ThpsCp136 424 3.00e-10 CTCGTAAAAA ACAAGGTCATCGCCAA GATTTAACAC ThpsCp135 149 3.00e-10 CTCGTAAAAA ACAAGGTCATCGCCAA GATTTAACAC ThpsCp081 180 3.00e-10 CTCGTAAAAA ACAAGGTCATCGCCAA GATTTAACAC ThpsCp080 439 3.00e-10 CTCGTAAAAA ACAAGGTCATCGCCAA GATTTAACAC ThpsCp137 322 3.04e-08 TATTAGAATA ACTAGGACATTGTCCA TTATTACAAA ThpsCp079 324 3.04e-08 TATTAGAATA ACTAGGACATTGTCCA TTATTACAAA 6610 220 5.61e-08 GCTTGAAAGG CCACGGACAATGTCGA TGAAAACTTT 23329 120 5.61e-08 GCTTGAAAGG CCACGGACAATGTCGA TGAAAACTTT ThpsCp038 391 6.99e-08 GCGTAACAGT ACAACAGCAACGCCAA CTTGCAAAAG bd1435 372 6.99e-08 GCGTAACAGT ACAACAGCAACGCCAA CTTGCAAAAG ThpsCp057 332 2.94e-07 CGTCTAGAGG CCTAGGACAGCTCCCT TTCACGGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- ThpsCp136 3e-10 423_[+2]_61 ThpsCp135 3e-10 148_[+2]_336 ThpsCp081 3e-10 179_[+2]_305 ThpsCp080 3e-10 438_[+2]_46 ThpsCp137 3e-08 321_[+2]_163 ThpsCp079 3e-08 323_[+2]_161 6610 5.6e-08 219_[+2]_265 23329 5.6e-08 119_[+2]_365 ThpsCp038 7e-08 390_[+2]_94 bd1435 7e-08 371_[+2]_113 ThpsCp057 2.9e-07 331_[+2]_153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=11 ThpsCp136 ( 424) ACAAGGTCATCGCCAA 1 ThpsCp135 ( 149) ACAAGGTCATCGCCAA 1 ThpsCp081 ( 180) ACAAGGTCATCGCCAA 1 ThpsCp080 ( 439) ACAAGGTCATCGCCAA 1 ThpsCp137 ( 322) ACTAGGACATTGTCCA 1 ThpsCp079 ( 324) ACTAGGACATTGTCCA 1 6610 ( 220) CCACGGACAATGTCGA 1 23329 ( 120) CCACGGACAATGTCGA 1 ThpsCp038 ( 391) ACAACAGCAACGCCAA 1 bd1435 ( 372) ACAACAGCAACGCCAA 1 ThpsCp057 ( 332) CCTAGGACAGCTCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 10185 bayes= 10.2086 E= 5.7e-017 96 96 -1010 -1010 -1010 284 -1010 -1010 96 -1010 -1010 -27 113 38 -1010 -1010 -1010 38 239 -1010 -104 -1010 239 -1010 28 -1010 22 14 -1010 284 -1010 -1010 142 -1010 -1010 -1010 -4 -1010 -78 73 -1010 218 -1010 14 -1010 -1010 254 -185 -1010 218 -1010 14 -1010 284 -1010 -1010 54 96 22 -1010 128 -1010 -1010 -185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 11 E= 5.7e-017 0.727273 0.272727 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.000000 0.000000 0.272727 0.818182 0.181818 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.181818 0.000000 0.818182 0.000000 0.454545 0.000000 0.181818 0.363636 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.000000 0.090909 0.545455 0.000000 0.636364 0.000000 0.363636 0.000000 0.000000 0.909091 0.090909 0.000000 0.636364 0.000000 0.363636 0.000000 1.000000 0.000000 0.000000 0.545455 0.272727 0.181818 0.000000 0.909091 0.000000 0.000000 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [AC]C[AT]AGG[AT]CA[TA][CT]G[CT]C[AC]A -------------------------------------------------------------------------------- Time 6.53 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 10 llr = 193 E-value = 8.2e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :6::26:88688848a6:4:2 pos.-specific C 44:a64:2::2224::2a:82 probability G 6:a:2:::24:::22:2:::6 matrix T ::::::a:::::::::::62: bits 2.8 * * 2.6 ** * 2.3 ** * 2.0 ** * * Relative 1.7 * ** * * * Entropy 1.4 * ** * * * * (27.9 bits) 1.1 ******* * * ** 0.9 **************** * ** 0.6 ********************* 0.3 ********************* 0.0 --------------------- Multilevel GAGCCATAAAAAAAAAACTCG consensus CC AC CGGCCCCG C ATA sequence G G G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- ThpsCp136 397 1.90e-12 TTTATAAAAT GCGCCCTAAGAAAAAAACTCG TAAAAAACAA ThpsCp135 122 1.90e-12 TTTATAAAAT GCGCCCTAAGAAAAAAACTCG TAAAAAACAA ThpsCp081 153 1.90e-12 TTTATAAAAT GCGCCCTAAGAAAAAAACTCG TAAAAAACAA ThpsCp080 412 1.90e-12 TTTATAAAAT GCGCCCTAAGAAAAAAACTCG TAAAAAACAA 6610 474 2.84e-09 CACTGTGCTC GAGCCATCAACCACAACCACA GACATC 23329 374 2.84e-09 CACTGTGCTC GAGCCATCAACCACAACCACA GACATCAAAG ThpsCp034 218 4.79e-09 AACTATTTAT CAGCAATAAAAACCAAGCACC ACCAATATAA bd1267 219 4.79e-09 AACTATTTAT CAGCAATAAAAACCAAGCACC ACCAATATAA ThpsCp137 257 8.53e-09 GTTTCGTCGT CAGCGATAGAAAAGGAACTTG AATTAAAAAC ThpsCp079 259 8.53e-09 GTTTCGTCGT CAGCGATAGAAAAGGAACTTG AATTAAAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- ThpsCp136 1.9e-12 396_[+3]_83 ThpsCp135 1.9e-12 121_[+3]_358 ThpsCp081 1.9e-12 152_[+3]_327 ThpsCp080 1.9e-12 411_[+3]_68 6610 2.8e-09 473_[+3]_6 23329 2.8e-09 373_[+3]_106 ThpsCp034 4.8e-09 217_[+3]_262 bd1267 4.8e-09 218_[+3]_261 ThpsCp137 8.5e-09 256_[+3]_223 ThpsCp079 8.5e-09 258_[+3]_221 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=10 ThpsCp136 ( 397) GCGCCCTAAGAAAAAAACTCG 1 ThpsCp135 ( 122) GCGCCCTAAGAAAAAAACTCG 1 ThpsCp081 ( 153) GCGCCCTAAGAAAAAAACTCG 1 ThpsCp080 ( 412) GCGCCCTAAGAAAAAAACTCG 1 6610 ( 474) GAGCCATCAACCACAACCACA 1 23329 ( 374) GAGCCATCAACCACAACCACA 1 ThpsCp034 ( 218) CAGCAATAAAAACCAAGCACC 1 bd1267 ( 219) CAGCAATAAAAACCAAGCACC 1 ThpsCp137 ( 257) CAGCGATAGAAAAGGAACTTG 1 ThpsCp079 ( 259) CAGCGATAGAAAAGGAACTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 10080 bayes= 10.92 E= 8.2e-017 -997 151 194 -997 68 151 -997 -997 -997 -997 268 -997 -997 284 -997 -997 -90 210 36 -997 68 151 -997 -997 -997 -997 -997 160 109 51 -997 -997 109 -997 36 -997 68 -997 136 -997 109 51 -997 -997 109 51 -997 -997 109 51 -997 -997 10 151 36 -997 109 -997 36 -997 142 -997 -997 -997 68 51 36 -997 -997 284 -997 -997 10 -997 -997 86 -997 251 -997 -72 -90 51 194 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 10 E= 8.2e-017 0.000000 0.400000 0.600000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.600000 0.200000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.800000 0.200000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.600000 0.000000 0.400000 0.000000 0.800000 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.400000 0.400000 0.200000 0.000000 0.800000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.200000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.600000 0.000000 0.800000 0.000000 0.200000 0.200000 0.200000 0.600000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [GC][AC]GC[CAG][AC]T[AC][AG][AG][AC][AC][AC][ACG][AG]A[ACG]C[TA][CT][GAC] -------------------------------------------------------------------------------- Time 9.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 23329 4.57e-14 34_[+3(4.21e-05)]_64_[+2(5.61e-08)]_\ 89_[+1(5.62e-05)]_101_[+1(3.49e-09)]_6_[+3(2.84e-09)]_106 5317 8.43e-02 59_[+3(4.21e-05)]_420 6610 4.57e-14 134_[+3(4.21e-05)]_64_\ [+2(5.61e-08)]_89_[+1(5.62e-05)]_101_[+1(3.49e-09)]_6_[+3(2.84e-09)]_6 bd1013 6.43e-03 318_[+1(5.23e-07)]_161 bd1243 1.87e-03 15_[+1(1.01e-07)]_464 bd1267 2.03e-04 218_[+3(4.79e-09)]_261 bd1435 4.18e-08 344_[+1(6.99e-08)]_6_[+2(6.99e-08)]_\ 113 bd997 3.83e-03 84_[+1(5.23e-07)]_395 ThpsCp024 5.69e-01 500 ThpsCp025 6.36e-01 500 ThpsCp033 3.83e-03 83_[+1(5.23e-07)]_396 ThpsCp034 2.03e-04 217_[+3(4.79e-09)]_262 ThpsCp036 1.87e-03 26_[+1(1.01e-07)]_453 ThpsCp038 4.18e-08 363_[+1(6.99e-08)]_6_[+2(6.99e-08)]_\ 94 ThpsCp057 2.37e-06 8_[+1(4.04e-05)]_229_[+1(1.67e-06)]_\ 52_[+2(2.94e-07)]_153 ThpsCp079 4.92e-12 237_[+1(3.05e-07)]_[+3(8.53e-09)]_\ 44_[+2(3.04e-08)]_161 ThpsCp080 3.33e-20 [+2(3.04e-08)]_354_[+1(3.72e-10)]_\ 20_[+3(1.90e-12)]_6_[+2(3.00e-10)]_46 ThpsCp081 3.33e-20 111_[+1(3.72e-10)]_20_\ [+3(1.90e-12)]_6_[+2(3.00e-10)]_305 ThpsCp135 3.33e-20 80_[+1(3.72e-10)]_20_[+3(1.90e-12)]_\ 6_[+2(3.00e-10)]_336 ThpsCp136 3.33e-20 355_[+1(3.72e-10)]_20_\ [+3(1.90e-12)]_6_[+2(3.00e-10)]_61 ThpsCp137 4.92e-12 235_[+1(3.05e-07)]_[+3(8.53e-09)]_\ 44_[+2(3.04e-08)]_163 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************