******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/76/76.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10437 1.0000 500 1137 1.0000 500 13647 1.0000 500 19345 1.0000 500 21138 1.0000 500 24089 1.0000 500 2613 1.0000 500 264853 1.0000 500 2653 1.0000 500 269735 1.0000 500 2910 1.0000 500 29304 1.0000 500 31174 1.0000 500 40580 1.0000 500 6402 1.0000 500 6652 1.0000 500 7217 1.0000 500 7460 1.0000 500 7800 1.0000 500 7876 1.0000 500 8748 1.0000 500 9024 1.0000 500 9382 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/76/76.seqs.fa -oc motifs/76 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 23 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 11500 N= 23 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.279 C 0.238 G 0.220 T 0.262 Background letter frequencies (from dataset with add-one prior applied): A 0.279 C 0.238 G 0.220 T 0.262 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 20 sites = 23 llr = 238 E-value = 4.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :64756147571296:473: pos.-specific C 91233275:4:58:292:46 probability G 122:21212133:11:3124 matrix T :11::1::1::1::1::2:: bits 2.2 2.0 1.7 * 1.5 * * * Relative 1.3 * ** * Entropy 1.1 * * ** * * (14.9 bits) 0.9 * * * * * ** * * 0.7 * * * *** ** * * 0.4 * *************** * 0.2 ******************** 0.0 -------------------- Multilevel CAAAAACCAAACCAACAACC consensus GCCC GA CGGA G AG sequence G G C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 6402 289 3.62e-10 ACAACCAAAA CAAACACAAAACCAACGAAC TCTTTCTTTT 10437 323 7.43e-08 CCAACGTTGG CAACACCCGAACCAACGAAC GAACGCAACA 6652 153 1.15e-07 TCAAGTGTTT CAAAGACCGAGGCAACAAAG CCTTCATCGC 8748 396 3.01e-07 CACTAACTGA CGAAAAACAAAACAACAAAC GCTACGATGA 19345 235 3.88e-07 GGATACTATG CAGAAACAACAGCACCCGCC GTCTTTTGCT 9024 148 1.13e-06 TCAAATAGAC CATAAACAACACAATCCAAC GTTTCAACCA 2613 450 1.27e-06 AATTCAAGCC CATCCACCAAGCCAGCCACC CCTTCACTGC 31174 264 1.41e-06 TCGTTATCGG CGAAGAGGAAGCCAACAAGG CAGCGGCGAG 7800 428 1.76e-06 CTCCCGGCAA CAACAACAACAACATCAGCC ACATCACGCT 7876 221 3.25e-06 ATATTAGTAA CGGGGACAACACCACCGAGC AAAGTGGTAA 9382 415 3.58e-06 ACAATCTGCC CCCAAGCCACAGCAACAGAC CAACGAACGA 1137 319 6.31e-06 GGCGACGTTA CACACCGAAAGCAAACCAGG CTACAAACAA 24089 26 7.54e-06 TACATAAACA CTAAGACCTGACCAACGTCG GCCGAAACAA 264853 357 8.24e-06 TTTCTCAGGC CACCACCCACATCATCATCC CGGCCATCCT 40580 260 1.07e-05 CACCGACCAA CACAGGACACAGCGACGACG AACCCTTCCT 13647 455 1.74e-05 CCTCGTATTT CCTACACCAAACCACTAAAG TGAGGCTCGA 7460 66 2.20e-05 GATGCATTCT CTCAATCTAAAGCAACATCG TCTTCCGTTC 2653 372 2.20e-05 ACACGGAAAA CAAACAGCAAGCAGACGATG AACAACCCAA 2910 472 2.55e-05 TTTTGTAAAT CAGCACGCGAAGAAGCAACC CGAGCGACA 269735 166 4.51e-05 GTATGAAGGA GGGAATCAGCATCAACAAGG GATTGTTTGT 21138 121 7.12e-05 GAGAGAAAGA GGGAAAGAACACAAACCCAG TCTTTCAGAT 29304 318 7.57e-05 TAAAGAGGCA CAAACAAGAGAACAAAGACC CCGGCTGCTT 7217 212 9.65e-05 GATACGCTGT CTACCTCATCGCCACCGTGC GAATTGTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 6402 3.6e-10 288_[+1]_192 10437 7.4e-08 322_[+1]_158 6652 1.2e-07 152_[+1]_328 8748 3e-07 395_[+1]_85 19345 3.9e-07 234_[+1]_246 9024 1.1e-06 147_[+1]_333 2613 1.3e-06 449_[+1]_31 31174 1.4e-06 263_[+1]_217 7800 1.8e-06 427_[+1]_53 7876 3.2e-06 220_[+1]_260 9382 3.6e-06 414_[+1]_66 1137 6.3e-06 318_[+1]_162 24089 7.5e-06 25_[+1]_455 264853 8.2e-06 356_[+1]_124 40580 1.1e-05 259_[+1]_221 13647 1.7e-05 454_[+1]_26 7460 2.2e-05 65_[+1]_415 2653 2.2e-05 371_[+1]_109 2910 2.6e-05 471_[+1]_9 269735 4.5e-05 165_[+1]_315 21138 7.1e-05 120_[+1]_360 29304 7.6e-05 317_[+1]_163 7217 9.6e-05 211_[+1]_269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=20 seqs=23 6402 ( 289) CAAACACAAAACCAACGAAC 1 10437 ( 323) CAACACCCGAACCAACGAAC 1 6652 ( 153) CAAAGACCGAGGCAACAAAG 1 8748 ( 396) CGAAAAACAAAACAACAAAC 1 19345 ( 235) CAGAAACAACAGCACCCGCC 1 9024 ( 148) CATAAACAACACAATCCAAC 1 2613 ( 450) CATCCACCAAGCCAGCCACC 1 31174 ( 264) CGAAGAGGAAGCCAACAAGG 1 7800 ( 428) CAACAACAACAACATCAGCC 1 7876 ( 221) CGGGGACAACACCACCGAGC 1 9382 ( 415) CCCAAGCCACAGCAACAGAC 1 1137 ( 319) CACACCGAAAGCAAACCAGG 1 24089 ( 26) CTAAGACCTGACCAACGTCG 1 264853 ( 357) CACCACCCACATCATCATCC 1 40580 ( 260) CACAGGACACAGCGACGACG 1 13647 ( 455) CCTACACCAAACCACTAAAG 1 7460 ( 66) CTCAATCTAAAGCAACATCG 1 2653 ( 372) CAAACAGCAAGCAGACGATG 1 2910 ( 472) CAGCACGCGAAGAAGCAACC 1 269735 ( 166) GGGAATCAGCATCAACAAGG 1 21138 ( 121) GGGAAAGAACACAAACCCAG 1 29304 ( 318) CAAACAAGAGAACAAAGACC 1 7217 ( 212) CTACCTCATCGCCACCGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 11063 bayes= 8.90689 E= 4.7e-003 -1117 194 -134 -1117 102 -145 -2 -101 64 -13 -2 -101 132 13 -234 -1117 78 35 -2 -1117 112 -45 -134 -101 -110 145 -2 -1117 49 100 -134 -259 140 -1117 -34 -159 78 87 -134 -1117 140 -1117 25 -1117 -110 113 25 -159 -36 172 -1117 -1117 171 -1117 -134 -1117 112 -45 -134 -101 -268 194 -1117 -259 64 -13 66 -1117 122 -245 -75 -59 32 72 -2 -259 -1117 125 98 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 23 E= 4.7e-003 0.000000 0.913043 0.086957 0.000000 0.565217 0.086957 0.217391 0.130435 0.434783 0.217391 0.217391 0.130435 0.695652 0.260870 0.043478 0.000000 0.478261 0.304348 0.217391 0.000000 0.608696 0.173913 0.086957 0.130435 0.130435 0.652174 0.217391 0.000000 0.391304 0.478261 0.086957 0.043478 0.739130 0.000000 0.173913 0.086957 0.478261 0.434783 0.086957 0.000000 0.739130 0.000000 0.260870 0.000000 0.130435 0.521739 0.260870 0.086957 0.217391 0.782609 0.000000 0.000000 0.913043 0.000000 0.086957 0.000000 0.608696 0.173913 0.086957 0.130435 0.043478 0.913043 0.000000 0.043478 0.434783 0.217391 0.347826 0.000000 0.652174 0.043478 0.130435 0.173913 0.347826 0.391304 0.217391 0.043478 0.000000 0.565217 0.434783 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- C[AG][ACG][AC][ACG]A[CG][CA]A[AC][AG][CG][CA]AAC[AGC]A[CAG][CG] -------------------------------------------------------------------------------- Time 5.05 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 16 sites = 15 llr = 173 E-value = 1.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :6::51:32517:542 pos.-specific C :12::1111213:1:: probability G 9:3a5195719:a338 matrix T 135::6:1:2::::3: bits 2.2 * * 2.0 * * 1.7 * * * 1.5 * * * * * Relative 1.3 * * * * * * Entropy 1.1 * ** * *** * (16.7 bits) 0.9 * ** * * *** * 0.7 ***** * * **** * 0.4 ********* ****** 0.2 **************** 0.0 ---------------- Multilevel GATGATGGGAGAGAAG consensus TG G AAC C GTA sequence C T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 6402 37 3.16e-09 TGAGAGTACA GTTGGTGGGAGAGGAG CCACAACAGG 40580 98 3.82e-08 CTTGGTTGTT GTTGGTGGGGGAGAGG CGTCGGTTGG 8748 206 2.15e-07 TGAGGAGGTC GATGGCGGGGGAGGGG GGAGGAGGCG 7217 53 4.02e-07 CTCTGCTGTT GTTGGTGTGAGCGGTG GTGCCGGTGG 31174 318 4.02e-07 TCGTCACCCT GATGGGGAGCGAGGTG CGGGATGGGA 2653 91 2.26e-06 GTTCGTGGAG TTGGATGTGAGAGAAG CGCAAGTGAA 21138 223 2.46e-06 CAGCGGAAGA GAGGAGGGCAGAGCAG AACCGCTAAA 7800 344 2.69e-06 GAGGCCGGGT GAGGAAGAGAGAGAGA GAGAGAGTTG 2613 75 2.69e-06 ATGAGAAGAT GATGATGACAGCGCTG GATATGATGT 2910 425 4.06e-06 CCTGCATTGT GACGGTCGGAGAGAGA GTGAAAATAG 1137 162 4.40e-06 GAGTACAAGC GTTGAAGGATGCGGAG GTAGAGCAAG 10437 115 5.93e-06 CCTCCCGTCG GCGGGTGGGCGCGAAA TTCTTGTGGA 269735 44 6.39e-06 TGTCGAAGAA GACGATGGATCAGATG GACCCACGTC 9382 260 1.18e-05 TTCCAACAAA GACGACGCACGAGAAG GAGTCTGGTG 7876 260 1.18e-05 ATGCAGAAGA TATGATGAGTAAGATG TAATAAACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 6402 3.2e-09 36_[+2]_448 40580 3.8e-08 97_[+2]_387 8748 2.1e-07 205_[+2]_279 7217 4e-07 52_[+2]_432 31174 4e-07 317_[+2]_167 2653 2.3e-06 90_[+2]_394 21138 2.5e-06 222_[+2]_262 7800 2.7e-06 343_[+2]_141 2613 2.7e-06 74_[+2]_410 2910 4.1e-06 424_[+2]_60 1137 4.4e-06 161_[+2]_323 10437 5.9e-06 114_[+2]_370 269735 6.4e-06 43_[+2]_441 9382 1.2e-05 259_[+2]_225 7876 1.2e-05 259_[+2]_225 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=16 seqs=15 6402 ( 37) GTTGGTGGGAGAGGAG 1 40580 ( 98) GTTGGTGGGGGAGAGG 1 8748 ( 206) GATGGCGGGGGAGGGG 1 7217 ( 53) GTTGGTGTGAGCGGTG 1 31174 ( 318) GATGGGGAGCGAGGTG 1 2653 ( 91) TTGGATGTGAGAGAAG 1 21138 ( 223) GAGGAGGGCAGAGCAG 1 7800 ( 344) GAGGAAGAGAGAGAGA 1 2613 ( 75) GATGATGACAGCGCTG 1 2910 ( 425) GACGGTCGGAGAGAGA 1 1137 ( 162) GTTGAAGGATGCGGAG 1 10437 ( 115) GCGGGTGGGCGCGAAA 1 269735 ( 44) GACGATGGATCAGATG 1 9382 ( 260) GACGACGCACGAGAAG 1 7876 ( 260) TATGATGAGTAAGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 11155 bayes= 10.8123 E= 1.3e-001 -1055 -1055 198 -98 110 -184 -1055 34 -1055 -25 28 102 -1055 -1055 218 -1055 93 -1055 108 -1055 -107 -84 -72 119 -1055 -184 208 -1055 -7 -184 128 -98 -48 -84 160 -1055 74 -25 -72 -39 -206 -184 198 -1055 139 16 -1055 -1055 -1055 -1055 218 -1055 93 -84 60 -1055 52 -1055 28 34 -48 -1055 186 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 15 E= 1.3e-001 0.000000 0.000000 0.866667 0.133333 0.600000 0.066667 0.000000 0.333333 0.000000 0.200000 0.266667 0.533333 0.000000 0.000000 1.000000 0.000000 0.533333 0.000000 0.466667 0.000000 0.133333 0.133333 0.133333 0.600000 0.000000 0.066667 0.933333 0.000000 0.266667 0.066667 0.533333 0.133333 0.200000 0.133333 0.666667 0.000000 0.466667 0.200000 0.133333 0.200000 0.066667 0.066667 0.866667 0.000000 0.733333 0.266667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.533333 0.133333 0.333333 0.000000 0.400000 0.000000 0.266667 0.333333 0.200000 0.000000 0.800000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- G[AT][TGC]G[AG]TG[GA][GA][ACT]G[AC]G[AG][ATG][GA] -------------------------------------------------------------------------------- Time 9.83 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 15 llr = 174 E-value = 1.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 1:1::::2::::1::: pos.-specific C 33474717193649:7 probability G 1::3:::11::3::43 matrix T 575:639:8171516: bits 2.2 2.0 1.7 1.5 * * * Relative 1.3 * * * * * Entropy 1.1 * **** *** *** (16.8 bits) 0.9 * ******** *** 0.7 * ********* *** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel TTTCTCTCTCTCTCTC consensus CCCGCT A CGC GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 13647 420 7.45e-09 CGCCCTCCGC TCTCTCTCTCTCTCTC TGGAAATACC 6652 457 6.40e-08 CAAAGCATTG CTCCCTTCTCTCCCTC CCATACCATT 10437 382 1.16e-07 CCGCCGATCT TCACTCTCTCTCTCTC GTCGTCGTCG 7217 365 1.96e-07 TCTCGGATTC TTTCTCTCTCCTCCTC CAGTAAAGTT 40580 296 6.82e-07 TCCTTCCTTC CTTCCTTCCCTCCCTC CTTCAGTGAC 29304 232 1.02e-06 CTTGCTTCTT TTACTTTATCTCCCTC TACCAAAAAC 24089 78 1.24e-06 TCCGACGACA TTCCCCTCCCTGTCGG CCGTAGAAAA 7800 280 2.72e-06 CACACACACA CCTCTCTCTTTTTCTC GGCAGGACTT 7876 435 3.46e-06 CTCGTCATAT CTCCCCTCGCCGCCGC TCCGGCCGCA 2910 201 3.74e-06 ATTATGAACA TTTGTCTATCCCTTTC ATTGAGAGAA 2653 248 4.04e-06 TCAGAGGACG TTTGTTTGTCTGTCTG AAAAGAGATG 8748 97 5.82e-06 TTCAGCATGC CCTGTCTCTCCCACGG CGAGAACACC 264853 307 6.23e-06 TTGCAACTAC TTCGTCCCTTTCTCGC CTGCTCCTCA 19345 20 1.05e-05 TCATTCTTCA ATCCCCTATCTCACGG TTCGCCCCCT 31174 460 1.41e-05 CTGCATTTTT GTCCCCTGTCTGCTGC CGCCTTCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 13647 7.4e-09 419_[+3]_65 6652 6.4e-08 456_[+3]_28 10437 1.2e-07 381_[+3]_103 7217 2e-07 364_[+3]_120 40580 6.8e-07 295_[+3]_189 29304 1e-06 231_[+3]_253 24089 1.2e-06 77_[+3]_407 7800 2.7e-06 279_[+3]_205 7876 3.5e-06 434_[+3]_50 2910 3.7e-06 200_[+3]_284 2653 4e-06 247_[+3]_237 8748 5.8e-06 96_[+3]_388 264853 6.2e-06 306_[+3]_178 19345 1e-05 19_[+3]_465 31174 1.4e-05 459_[+3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=15 13647 ( 420) TCTCTCTCTCTCTCTC 1 6652 ( 457) CTCCCTTCTCTCCCTC 1 10437 ( 382) TCACTCTCTCTCTCTC 1 7217 ( 365) TTTCTCTCTCCTCCTC 1 40580 ( 296) CTTCCTTCCCTCCCTC 1 29304 ( 232) TTACTTTATCTCCCTC 1 24089 ( 78) TTCCCCTCCCTGTCGG 1 7800 ( 280) CCTCTCTCTTTTTCTC 1 7876 ( 435) CTCCCCTCGCCGCCGC 1 2910 ( 201) TTTGTCTATCCCTTTC 1 2653 ( 248) TTTGTTTGTCTGTCTG 1 8748 ( 97) CCTGTCTCTCCCACGG 1 264853 ( 307) TTCGTCCCTTTCTCGC 1 19345 ( 20) ATCCCCTATCTCACGG 1 31174 ( 460) GTCCCCTGTCTGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 11155 bayes= 10.2115 E= 1.2e+000 -206 48 -172 102 -1055 16 -1055 148 -107 75 -1055 83 -1055 162 28 -1055 -1055 75 -1055 119 -1055 162 -1055 2 -1055 -184 -1055 183 -48 148 -72 -1055 -1055 -84 -172 161 -1055 186 -1055 -98 -1055 16 -1055 148 -1055 133 28 -98 -107 75 -1055 83 -1055 186 -1055 -98 -1055 -1055 86 119 -1055 162 28 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 15 E= 1.2e+000 0.066667 0.333333 0.066667 0.533333 0.000000 0.266667 0.000000 0.733333 0.133333 0.400000 0.000000 0.466667 0.000000 0.733333 0.266667 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.733333 0.000000 0.266667 0.000000 0.066667 0.000000 0.933333 0.200000 0.666667 0.133333 0.000000 0.000000 0.133333 0.066667 0.800000 0.000000 0.866667 0.000000 0.133333 0.000000 0.266667 0.000000 0.733333 0.000000 0.600000 0.266667 0.133333 0.133333 0.400000 0.000000 0.466667 0.000000 0.866667 0.000000 0.133333 0.000000 0.000000 0.400000 0.600000 0.000000 0.733333 0.266667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TC][TC][TC][CG][TC][CT]T[CA]TC[TC][CG][TC]C[TG][CG] -------------------------------------------------------------------------------- Time 14.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10437 2.08e-09 114_[+2(5.93e-06)]_192_\ [+1(7.43e-08)]_39_[+3(1.16e-07)]_103 1137 5.91e-05 161_[+2(4.40e-06)]_141_\ [+1(6.31e-06)]_162 13647 4.32e-06 419_[+3(7.45e-09)]_19_\ [+1(1.74e-05)]_26 19345 8.34e-05 19_[+3(1.05e-05)]_199_\ [+1(3.88e-07)]_246 21138 2.08e-03 120_[+1(7.12e-05)]_82_\ [+2(2.46e-06)]_262 24089 8.16e-05 25_[+1(7.54e-06)]_32_[+3(1.24e-06)]_\ 407 2613 5.53e-05 74_[+2(2.69e-06)]_2_[+2(2.89e-05)]_\ 341_[+1(1.27e-06)]_31 264853 2.71e-04 127_[+3(6.80e-05)]_163_\ [+3(6.23e-06)]_34_[+1(8.24e-06)]_124 2653 3.91e-06 90_[+2(2.26e-06)]_141_\ [+3(4.04e-06)]_108_[+1(2.20e-05)]_109 269735 1.74e-03 43_[+2(6.39e-06)]_106_\ [+1(4.51e-05)]_315 2910 7.03e-06 200_[+3(3.74e-06)]_208_\ [+2(4.06e-06)]_31_[+1(2.55e-05)]_9 29304 1.18e-03 231_[+3(1.02e-06)]_70_\ [+1(7.57e-05)]_12_[+3(2.05e-05)]_135 31174 2.16e-07 263_[+1(1.41e-06)]_34_\ [+2(4.02e-07)]_126_[+3(1.41e-05)]_25 40580 9.96e-09 97_[+2(3.82e-08)]_146_\ [+1(1.07e-05)]_16_[+3(6.82e-07)]_189 6402 3.10e-11 36_[+2(3.16e-09)]_20_[+2(3.04e-05)]_\ 200_[+1(3.62e-10)]_192 6652 3.38e-07 152_[+1(1.15e-07)]_284_\ [+3(6.40e-08)]_28 7217 2.02e-07 52_[+2(4.02e-07)]_143_\ [+1(9.65e-05)]_133_[+3(1.96e-07)]_120 7460 4.90e-02 65_[+1(2.20e-05)]_415 7800 3.31e-07 279_[+3(2.72e-06)]_48_\ [+2(2.69e-06)]_68_[+1(1.76e-06)]_53 7876 2.70e-06 220_[+1(3.25e-06)]_19_\ [+2(1.18e-05)]_159_[+3(3.46e-06)]_50 8748 1.32e-08 96_[+3(5.82e-06)]_93_[+2(2.15e-07)]_\ 174_[+1(3.01e-07)]_85 9024 1.63e-02 147_[+1(1.13e-06)]_333 9382 4.15e-04 259_[+2(1.18e-05)]_139_\ [+1(3.58e-06)]_66 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************