******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/85/85.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 11731 1.0000 500 11806 1.0000 500 11978 1.0000 500 12191 1.0000 500 16236 1.0000 500 21211 1.0000 500 2377 1.0000 500 24401 1.0000 500 25721 1.0000 500 261211 1.0000 500 262480 1.0000 500 268553 1.0000 500 2728 1.0000 500 3318 1.0000 500 3750 1.0000 500 4218 1.0000 500 4321 1.0000 500 4433 1.0000 500 4804 1.0000 500 5961 1.0000 500 6781 1.0000 500 7090 1.0000 500 7138 1.0000 500 7251 1.0000 500 8526 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/85/85.seqs.fa -oc motifs/85 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 25 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12500 N= 25 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.264 C 0.236 G 0.234 T 0.266 Background letter frequencies (from dataset with add-one prior applied): A 0.264 C 0.236 G 0.234 T 0.266 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 24 llr = 258 E-value = 1.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :23324315434::5515435 pos.-specific C 94268349:361793394473 probability G 1:3::23:43111:1:::::3 matrix T :432:2::1::421:2::1:: bits 2.1 1.9 1.7 * * * 1.5 * * * * Relative 1.3 * * * * * Entropy 1.0 * * * * * * (15.5 bits) 0.8 * * * ** ** * 0.6 * ** ** * ** ** * 0.4 ** ** **** ******** 0.2 ** ** *************** 0.0 --------------------- Multilevel CCGCCACCAACACCAACAACA consensus TTAACA GCATT CC CCAC sequence AA G G T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 7251 456 4.22e-09 TTTTCTATAA CAGCCACCACCACCCCCACCG ACAACCAACC 12191 202 2.87e-08 GGACTGCAAG CAGCCAACAACATCACCACCA CCACAAGCGC 262480 374 1.33e-07 AACATAACAA CAACCCCCGACCCCAACCACG CACCCTCATT 2377 90 2.29e-07 CGACCACCAA CAAACCACAAAACCAACCACA CCACACCACA 25721 471 2.97e-07 CTCTCTCTCT CTTCCGGCAACACCCCAACCA AACACTATC 24401 375 5.47e-07 CTAGCTCTCT CTAACTTCAACACCAACACCA TTTCGTGTCG 4433 454 8.66e-07 TCCACAACTG CCACAGCCGCCGCCACCCACG AGGTCCCCAC 21211 246 9.68e-07 GATGTAAAAG CCTCCTGAAAATCCAACAACA ACTGTACACT 261211 196 1.34e-06 TTTGGAACAT CCTTCGACACAACCCACAAAA AAATACTAGA 16236 358 1.34e-06 AACGTAAATA CCCCCAACGCGACCACCCTCC GACCTCCTAC 11978 474 2.23e-06 AACCACCGTC CCTACACCGACGCCGACACAG GCCACC 268553 9 3.61e-06 CATCTACG GTGCCTCCGCCTCCGCCCACG GTGACGATCA 2728 163 3.96e-06 CCCCTCCTTC CCCCCCGCGGGTGCACCAACC ACACCACACG 6781 472 4.33e-06 TGCTCACAAC GTGAACCCAGCTCCCACAACC TTGTCACC 4804 31 7.33e-06 GTTGGTGTTT CCCTCAACGGCATCATCCTCG TTCTCATTTG 7138 73 8.67e-06 TCCCTCCTTT CCACCACCGGCCGCATCGCCA CTCACACGAT 4321 304 9.41e-06 CATCGTTTAG CTTCAGCCGACTGCCTCCAAC AATACTATGC 4218 381 1.40e-05 TACCAGGATA CCGAAAGCACATCTCACACAA GACAAAGTTG 3318 127 1.89e-05 TTTCTCTTGG CAAACCGCTGATCCAAACCCA GCAGCGTGTA 5961 96 2.18e-05 TCAGTCCCCG CTTCCTCCAACTTCTTCATAA CACCATATGT 11731 432 2.52e-05 TTCTTCGCAG CTCCAACAAAATTCAACACAC CTCCATTGAA 7090 384 3.78e-05 GATTTGATTA CTGTCAACTCCTTCCTCCCCT GTTCCGGTTC 8526 301 4.04e-05 CAACCCAGCA CTGCCAACGGTACTCACAGCA TCAGCGGCTT 11806 479 4.59e-05 TTCACCTCGT CCTTGCGCACCACCACACAAC C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 7251 4.2e-09 455_[+1]_24 12191 2.9e-08 201_[+1]_278 262480 1.3e-07 373_[+1]_106 2377 2.3e-07 89_[+1]_390 25721 3e-07 470_[+1]_9 24401 5.5e-07 374_[+1]_105 4433 8.7e-07 453_[+1]_26 21211 9.7e-07 245_[+1]_234 261211 1.3e-06 195_[+1]_284 16236 1.3e-06 357_[+1]_122 11978 2.2e-06 473_[+1]_6 268553 3.6e-06 8_[+1]_471 2728 4e-06 162_[+1]_317 6781 4.3e-06 471_[+1]_8 4804 7.3e-06 30_[+1]_449 7138 8.7e-06 72_[+1]_407 4321 9.4e-06 303_[+1]_176 4218 1.4e-05 380_[+1]_99 3318 1.9e-05 126_[+1]_353 5961 2.2e-05 95_[+1]_384 11731 2.5e-05 431_[+1]_48 7090 3.8e-05 383_[+1]_96 8526 4e-05 300_[+1]_179 11806 4.6e-05 478_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=24 7251 ( 456) CAGCCACCACCACCCCCACCG 1 12191 ( 202) CAGCCAACAACATCACCACCA 1 262480 ( 374) CAACCCCCGACCCCAACCACG 1 2377 ( 90) CAAACCACAAAACCAACCACA 1 25721 ( 471) CTTCCGGCAACACCCCAACCA 1 24401 ( 375) CTAACTTCAACACCAACACCA 1 4433 ( 454) CCACAGCCGCCGCCACCCACG 1 21211 ( 246) CCTCCTGAAAATCCAACAACA 1 261211 ( 196) CCTTCGACACAACCCACAAAA 1 16236 ( 358) CCCCCAACGCGACCACCCTCC 1 11978 ( 474) CCTACACCGACGCCGACACAG 1 268553 ( 9) GTGCCTCCGCCTCCGCCCACG 1 2728 ( 163) CCCCCCGCGGGTGCACCAACC 1 6781 ( 472) GTGAACCCAGCTCCCACAACC 1 4804 ( 31) CCCTCAACGGCATCATCCTCG 1 7138 ( 73) CCACCACCGGCCGCATCGCCA 1 4321 ( 304) CTTCAGCCGACTGCCTCCAAC 1 4218 ( 381) CCGAAAGCACATCTCACACAA 1 3318 ( 127) CAAACCGCTGATCCAAACCCA 1 5961 ( 96) CTTCCTCCAACTTCTTCATAA 1 11731 ( 432) CTCCAACAAAATTCAACACAC 1 7090 ( 384) CTGTCAACTCCTTCCTCCCCT 1 8526 ( 301) CTGCCAACGGTACTCACAGCA 1 11806 ( 479) CCTTGCGCACCACCACACAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 12000 bayes= 9.41113 E= 1.2e-005 -1123 196 -149 -1123 -34 82 -1123 50 -8 -50 32 14 -8 130 -1123 -67 -34 167 -249 -1123 66 8 -49 -67 14 82 9 -267 -166 196 -1123 -1123 92 -1123 83 -167 66 50 9 -1123 -8 140 -149 -267 66 -150 -149 65 -1123 150 -91 -35 -1123 196 -1123 -167 104 50 -149 -267 80 50 -1123 -35 -108 189 -1123 -1123 104 82 -249 -1123 66 82 -249 -109 14 158 -1123 -1123 80 8 9 -267 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 24 E= 1.2e-005 0.000000 0.916667 0.083333 0.000000 0.208333 0.416667 0.000000 0.375000 0.250000 0.166667 0.291667 0.291667 0.250000 0.583333 0.000000 0.166667 0.208333 0.750000 0.041667 0.000000 0.416667 0.250000 0.166667 0.166667 0.291667 0.416667 0.250000 0.041667 0.083333 0.916667 0.000000 0.000000 0.500000 0.000000 0.416667 0.083333 0.416667 0.333333 0.250000 0.000000 0.250000 0.625000 0.083333 0.041667 0.416667 0.083333 0.083333 0.416667 0.000000 0.666667 0.125000 0.208333 0.000000 0.916667 0.000000 0.083333 0.541667 0.333333 0.083333 0.041667 0.458333 0.333333 0.000000 0.208333 0.125000 0.875000 0.000000 0.000000 0.541667 0.416667 0.041667 0.000000 0.416667 0.416667 0.041667 0.125000 0.291667 0.708333 0.000000 0.000000 0.458333 0.250000 0.250000 0.041667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- C[CTA][GTA][CA][CA][AC][CAG]C[AG][ACG][CA][AT][CT]C[AC][ACT]C[AC][AC][CA][ACG] -------------------------------------------------------------------------------- Time 5.52 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 20 sites = 12 llr = 176 E-value = 2.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :13::33::3:15::1:4:: pos.-specific C ::::2:::::::::2::::1 probability G 286674487289:743a:89 matrix T 81142333363:5347:63: bits 2.1 * 1.9 * 1.7 * * * 1.5 * * * Relative 1.3 ** * ** * ** Entropy 1.0 ** * ** ** * * ** (21.1 bits) 0.8 ***** ** **** ***** 0.6 ***** ************* 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel TGGGGGGGGTGGAGGTGTGG consensus AT AATTAT TTTG AT sequence TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 4433 220 1.77e-09 AGCCGGCGGC TGGGCGGTGTGGAGGTGTGG CCGCTGTGGC 4804 260 2.06e-09 GCCATGCTGT TGGTGGTGGTTGTGTTGTGG GAGGAGCAGG 5961 264 2.33e-08 GTGGTGGTGT TGGGTAGGGTTGATTTGAGG GAGATGAGGA 268553 421 2.59e-08 CCATGGGCGG TGGTGGTGGAGGAGGAGAGG ACGGAGGGGG 3750 94 3.20e-08 TAGGATAGAG TGAGGAGGTGGGTGGTGATG GCTCGGCTTG 11806 357 4.77e-08 GAGGCAGTGA TGTGTGGTGTGGTGGTGTGG CATGGGGACA 262480 52 7.61e-08 CCGACGCAGA TGAGGATGTTTGATGGGTGG AGGACGATGC 8526 9 9.08e-08 TCCATCCT TGGTGTGGGTGATGCGGTGG CAAAATCAAA 261211 331 1.76e-07 GAAAAGAGGA GGGGGGAGTTGGATTTGAGC CAGGGTCCCA 25721 28 4.45e-07 CATGCAGTGC TGATCAAGTGGGTTTGGAGG GATGAAATGA 16236 258 7.29e-07 CACCTCTCGC GAGGGTAGGAGGTGCTGTTG GATGTTTAAA 11731 162 8.65e-07 TGCATTTCAA TTATGTATGAGGAGTTGTTG TCAGTTCCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 4433 1.8e-09 219_[+2]_261 4804 2.1e-09 259_[+2]_221 5961 2.3e-08 263_[+2]_217 268553 2.6e-08 420_[+2]_60 3750 3.2e-08 93_[+2]_387 11806 4.8e-08 356_[+2]_124 262480 7.6e-08 51_[+2]_429 8526 9.1e-08 8_[+2]_472 261211 1.8e-07 330_[+2]_150 25721 4.5e-07 27_[+2]_453 16236 7.3e-07 257_[+2]_223 11731 8.7e-07 161_[+2]_319 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=20 seqs=12 4433 ( 220) TGGGCGGTGTGGAGGTGTGG 1 4804 ( 260) TGGTGGTGGTTGTGTTGTGG 1 5961 ( 264) TGGGTAGGGTTGATTTGAGG 1 268553 ( 421) TGGTGGTGGAGGAGGAGAGG 1 3750 ( 94) TGAGGAGGTGGGTGGTGATG 1 11806 ( 357) TGTGTGGTGTGGTGGTGTGG 1 262480 ( 52) TGAGGATGTTTGATGGGTGG 1 8526 ( 9) TGGTGTGGGTGATGCGGTGG 1 261211 ( 331) GGGGGGAGTTGGATTTGAGC 1 25721 ( 28) TGATCAAGTGGGTTTGGAGG 1 16236 ( 258) GAGGGTAGGAGGTGCTGTTG 1 11731 ( 162) TTATGTATGAGGAGTTGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 12025 bayes= 11.5533 E= 2.4e-003 -1023 -1023 -49 165 -166 -1023 183 -167 34 -1023 132 -167 -1023 -1023 132 65 -1023 -50 151 -67 34 -1023 83 -9 34 -1023 83 -9 -1023 -1023 168 -9 -1023 -1023 151 33 -8 -1023 -49 113 -1023 -1023 168 -9 -166 -1023 197 -1023 92 -1023 -1023 91 -1023 -1023 151 33 -1023 -50 83 65 -166 -1023 9 133 -1023 -1023 209 -1023 66 -1023 -1023 113 -1023 -1023 168 -9 -1023 -150 197 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 12 E= 2.4e-003 0.000000 0.000000 0.166667 0.833333 0.083333 0.000000 0.833333 0.083333 0.333333 0.000000 0.583333 0.083333 0.000000 0.000000 0.583333 0.416667 0.000000 0.166667 0.666667 0.166667 0.333333 0.000000 0.416667 0.250000 0.333333 0.000000 0.416667 0.250000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.666667 0.333333 0.250000 0.000000 0.166667 0.583333 0.000000 0.000000 0.750000 0.250000 0.083333 0.000000 0.916667 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.666667 0.333333 0.000000 0.166667 0.416667 0.416667 0.083333 0.000000 0.250000 0.666667 0.000000 0.000000 1.000000 0.000000 0.416667 0.000000 0.000000 0.583333 0.000000 0.000000 0.750000 0.250000 0.000000 0.083333 0.916667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- TG[GA][GT]G[GAT][GAT][GT][GT][TA][GT]G[AT][GT][GT][TG]G[TA][GT]G -------------------------------------------------------------------------------- Time 10.81 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 13 sites = 13 llr = 150 E-value = 3.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 2272:::28a8:: pos.-specific C ::21::281:2:8 probability G 2821::7:::::2 matrix T 71:6aa2:1::a: bits 2.1 1.9 ** * * 1.7 ** * * 1.5 ** * * * Relative 1.3 ** ****** Entropy 1.0 * ** ****** (16.6 bits) 0.8 *** ********* 0.6 *** ********* 0.4 ************* 0.2 ************* 0.0 ------------- Multilevel TGATTTGCAAATC consensus A C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------- 3750 479 1.97e-08 TTTCATTTTT TGATTTGCAAATC ACCTTCAAC 12191 431 1.97e-08 AAAAGTGGCC TGATTTGCAAATC CAGTGAGCCA 2377 377 5.69e-08 GATCTAATTG TGATTTGCAACTC ATCTCTCCGT 4218 472 2.70e-07 GATACTGTGC TGAGTTGCAAATC GCATCCCTCT 4804 485 1.19e-06 TCCAGTGACG AGATTTTCAAATC AAC 7090 256 1.93e-06 AGGCAGCTGT TGACTTTCAAATC TGACGTGGGA 261211 93 4.02e-06 TGTGGCTATG TACTTTGCAAATG AACACATCCA 8526 96 6.74e-06 GATGTTTTGT TGATTTCCCACTC ATCTCCTTGT 11806 439 7.34e-06 ACTATTTTCG GGAATTCCAACTC CAACCGTGTG 16236 79 7.88e-06 CGTTGCAGAA AGGATTGCAAATG GAGATCGAGT 3318 267 9.61e-06 CGTCTGCCGT TGCATTGAAAATG GCTTAACATT 24401 18 1.08e-05 TCTGTGGTGT TAGTTTGCTAATC CCTGGCTTTC 5961 33 1.14e-05 TGACGACGGT GTATTTGAAAATC ATTTCACCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 3750 2e-08 478_[+3]_9 12191 2e-08 430_[+3]_57 2377 5.7e-08 376_[+3]_111 4218 2.7e-07 471_[+3]_16 4804 1.2e-06 484_[+3]_3 7090 1.9e-06 255_[+3]_232 261211 4e-06 92_[+3]_395 8526 6.7e-06 95_[+3]_392 11806 7.3e-06 438_[+3]_49 16236 7.9e-06 78_[+3]_409 3318 9.6e-06 266_[+3]_221 24401 1.1e-05 17_[+3]_470 5961 1.1e-05 32_[+3]_455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=13 seqs=13 3750 ( 479) TGATTTGCAAATC 1 12191 ( 431) TGATTTGCAAATC 1 2377 ( 377) TGATTTGCAACTC 1 4218 ( 472) TGAGTTGCAAATC 1 4804 ( 485) AGATTTTCAAATC 1 7090 ( 256) TGACTTTCAAATC 1 261211 ( 93) TACTTTGCAAATG 1 8526 ( 96) TGATTTCCCACTC 1 11806 ( 439) GGAATTCCAACTC 1 16236 ( 79) AGGATTGCAAATG 1 3318 ( 267) TGCATTGAAAATG 1 24401 ( 18) TAGTTTGCTAATC 1 5961 ( 33) GTATTTGAAAATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 13 n= 12200 bayes= 10.4036 E= 3.7e-001 -78 -1035 -61 138 -78 -1035 171 -179 139 -62 -61 -1035 -19 -162 -160 121 -1035 -1035 -1035 191 -1035 -1035 -1035 191 -1035 -62 156 -79 -78 184 -1035 -1035 168 -162 -1035 -179 192 -1035 -1035 -1035 154 -3 -1035 -1035 -1035 -1035 -1035 191 -1035 170 -2 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 13 nsites= 13 E= 3.7e-001 0.153846 0.000000 0.153846 0.692308 0.153846 0.000000 0.769231 0.076923 0.692308 0.153846 0.153846 0.000000 0.230769 0.076923 0.076923 0.615385 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.153846 0.692308 0.153846 0.153846 0.846154 0.000000 0.000000 0.846154 0.076923 0.000000 0.076923 1.000000 0.000000 0.000000 0.000000 0.769231 0.230769 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.769231 0.230769 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- TGA[TA]TTGCAA[AC]T[CG] -------------------------------------------------------------------------------- Time 15.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 11731 3.31e-04 161_[+2(8.65e-07)]_250_\ [+1(2.52e-05)]_48 11806 4.00e-07 356_[+2(4.77e-08)]_62_\ [+3(7.34e-06)]_27_[+1(4.59e-05)]_1 11978 1.69e-03 473_[+1(2.23e-06)]_6 12191 1.78e-10 127_[+2(6.41e-06)]_26_\ [+2(4.83e-05)]_8_[+1(2.87e-08)]_208_[+3(1.97e-08)]_57 16236 2.07e-07 78_[+3(7.88e-06)]_166_\ [+2(7.29e-07)]_80_[+1(1.34e-06)]_122 21211 9.94e-03 245_[+1(9.68e-07)]_234 2377 5.17e-07 89_[+1(2.29e-07)]_266_\ [+3(5.69e-08)]_111 24401 1.82e-05 17_[+3(1.08e-05)]_344_\ [+1(5.47e-07)]_38_[+1(3.54e-05)]_46 25721 1.02e-06 27_[+2(4.45e-07)]_423_\ [+1(2.97e-07)]_9 261211 3.06e-08 92_[+3(4.02e-06)]_90_[+1(1.34e-06)]_\ 114_[+2(1.76e-07)]_150 262480 3.42e-07 51_[+2(7.61e-08)]_302_\ [+1(1.33e-07)]_106 268553 3.18e-06 8_[+1(3.61e-06)]_391_[+2(2.59e-08)]_\ 60 2728 6.75e-03 162_[+1(3.96e-06)]_317 3318 1.84e-04 100_[+2(9.09e-05)]_6_[+1(1.89e-05)]_\ 119_[+3(9.61e-06)]_221 3750 4.08e-08 93_[+2(3.20e-08)]_365_\ [+3(1.97e-08)]_9 4218 5.56e-05 380_[+1(1.40e-05)]_70_\ [+3(2.70e-07)]_16 4321 5.99e-02 303_[+1(9.41e-06)]_176 4433 7.92e-08 19_[+2(3.55e-05)]_180_\ [+2(1.77e-09)]_30_[+2(6.63e-05)]_164_[+1(8.66e-07)]_26 4804 7.87e-10 30_[+1(7.33e-06)]_103_\ [+2(8.60e-05)]_85_[+2(2.06e-09)]_205_[+3(1.19e-06)]_3 5961 1.59e-07 32_[+3(1.14e-05)]_50_[+1(2.18e-05)]_\ 147_[+2(2.33e-08)]_217 6781 5.25e-02 471_[+1(4.33e-06)]_8 7090 6.40e-04 255_[+3(1.93e-06)]_115_\ [+1(3.78e-05)]_96 7138 2.96e-03 72_[+1(8.67e-06)]_407 7251 1.27e-04 455_[+1(4.22e-09)]_24 8526 5.92e-07 8_[+2(9.08e-08)]_67_[+3(6.74e-06)]_\ 192_[+1(4.04e-05)]_179 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************