******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/92/92.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10083 1.0000 500 10133 1.0000 500 10180 1.0000 500 10181 1.0000 500 10286 1.0000 500 10295 1.0000 500 1052 1.0000 500 1053 1.0000 500 1054 1.0000 500 1055 1.0000 500 10654 1.0000 500 10992 1.0000 500 11130 1.0000 500 11420 1.0000 500 1201 1.0000 500 1202 1.0000 500 12162 1.0000 500 12168 1.0000 500 12182 1.0000 500 12192 1.0000 500 12193 1.0000 500 12197 1.0000 500 1305 1.0000 500 1388 1.0000 500 1415 1.0000 500 1937 1.0000 500 1975 1.0000 500 2053 1.0000 500 20847 1.0000 500 21272 1.0000 500 21370 1.0000 500 22734 1.0000 500 23263 1.0000 500 23433 1.0000 500 23434 1.0000 500 23641 1.0000 500 24014 1.0000 500 24064 1.0000 500 24160 1.0000 500 2425 1.0000 500 24408 1.0000 500 24443 1.0000 500 24569 1.0000 500 25464 1.0000 500 25821 1.0000 500 25864 1.0000 500 25912 1.0000 500 26082 1.0000 500 260926 1.0000 500 261036 1.0000 500 261727 1.0000 500 262708 1.0000 500 264191 1.0000 500 31391 1.0000 500 3243 1.0000 500 33883 1.0000 500 3482 1.0000 500 36420 1.0000 500 3646 1.0000 500 36911 1.0000 500 37127 1.0000 500 3882 1.0000 500 4147 1.0000 500 4300 1.0000 500 4547 1.0000 500 4596 1.0000 500 4705 1.0000 500 4771 1.0000 500 4782 1.0000 500 5147 1.0000 500 5607 1.0000 500 6004 1.0000 500 6330 1.0000 500 6580 1.0000 500 6773 1.0000 500 6774 1.0000 500 7023 1.0000 500 7024 1.0000 500 7087 1.0000 500 7192 1.0000 500 7236 1.0000 500 7484 1.0000 500 8203 1.0000 500 8205 1.0000 500 8905 1.0000 500 8926 1.0000 500 8927 1.0000 500 9549 1.0000 500 9764 1.0000 500 9990 1.0000 500 bd1670 1.0000 500 bd1852 1.0000 500 bd886 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/92/92.seqs.fa -oc motifs/92 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 93 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 46500 N= 93 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.270 C 0.228 G 0.223 T 0.279 Background letter frequencies (from dataset with add-one prior applied): A 0.270 C 0.228 G 0.223 T 0.279 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 70 llr = 692 E-value = 1.3e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 32435366457364:a51884 pos.-specific C 55434622251612a:29:25 probability G :3:111212:1:12::::2:: matrix T 21231::12:1122::2:::: bits 2.2 1.9 * 1.7 ** 1.5 ** * Relative 1.3 ** * Entropy 1.1 ** *** (14.3 bits) 0.9 * ** **** 0.6 * *** ** **** 0.4 * **** **** ******* 0.2 ******** **** ******* 0.0 --------------------- Multilevel CCAAACAAACACAACAACAAC consensus AGCCCACCTA A C C CA sequence T T C T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 36420 432 5.05e-09 CTTCCAGATT ACACAACAACACAACAACAAA TCTTATCACA 36911 24 1.26e-08 TTTCGAAAGC ACAGACAACAACAACAACAAC AGCAGACAGC 3243 471 1.26e-08 GGCAAACACC ACCTCCGATAACAACAACAAC TCAACGGTC 1053 21 2.91e-08 TCACTACCAA CGCCCCAACCAAAGCACCAAA GGCAAGCAAA 8927 430 5.19e-08 TGAAAGCCAC ACTCAACAACACATCAACAAC ATCCATCCAG 12168 275 1.07e-07 GATGAGCGAG TCAAACACAAACACCACCACC GTATCACTGC 10181 455 1.27e-07 ATACAACATA CAACAAACTCACAACACCAAA CCCCCTACAT 4147 453 2.45e-07 GCAATGAGAT TGAAACAACAACATCATCAAA TCAAACAACC 2053 419 2.45e-07 CACCTCAGGT AGCCACCCACAAAACAACACA TCTCGCTCAT 8905 189 3.34e-07 AATGAGCCCC ACCTTCACTCACAGCAACAAC AGCAACGCTA 10180 474 3.34e-07 TACAACACGA CGCTGCAATCAATACAACAAC AGAAAC 5147 477 4.52e-07 TCACGTACAC ATAAACATACACATCAACAAC ATC bd1852 414 1.38e-06 ATGTTTTGAC TCATGAAACAACTCCAACAAC CAAAAAGAAT 10083 370 1.38e-06 TGGGCGTGAG CACAGCAACCACCACACCAAA GCGTGAGAGG 8205 378 1.79e-06 GAGTGACTAT CCCTACCACCAGACCACCACC ATCACGCCCA 4300 343 1.79e-06 GACGACATTG CCCCAAGACAAAGCCAACACC TCACACCTTG 1052 461 1.79e-06 CACTTATCAA CACCAACATCACTTCACCAAA TTGACACAAC 7484 477 2.03e-06 CTCACACAAT ACGAACAAAACAAACAACAAC ATC 22734 222 2.29e-06 AGCAATGCTA CCTATCAAGCACGACACCAAA ACGACTCCGT 1415 38 2.59e-06 TAAGAAGCCA AGCAGACCAAACTCCAACAAC ATGAACTACC 11420 470 2.93e-06 TCGCTTAGAT AGATAGCAGAACACCAACACC CTTTACAGCA 1055 417 3.30e-06 TGTTTGTCCT CCCACCAATCTCATCAAAACA ATCAAATCTC bd1670 267 3.71e-06 CGAGGTAGAC CCCAGCGGCAACACCAACGAA AACGGATGGA 37127 44 3.71e-06 ATACGTGCAC CACTCCAATCAAAGCACAAAA ATGCGATGCC 33883 273 3.71e-06 CAACCACAGT CGACATAACCAGAACAACAAC CGCCTCCTCC 25821 475 3.71e-06 GATTGCTGTT TGATACACGCAAAGCAACGAA ACCAA 11130 472 3.71e-06 GACAACGCAC CCAACACAACCAACCACCGAC ACAGCCAA bd886 177 4.17e-06 TTAACACGCG TCCGCCGAAAACACCAAAAAA GGCGATGAAA 25912 450 4.17e-06 AAACAATCTA ATACACGAACTCTACAACAAA TCCCACAATC 6580 460 4.67e-06 ACCTCTCTTC CCAACCAAAAGTATCATCAAC GATCAACGCC 1054 36 5.23e-06 TTAACTACTG CAACAGACAACAAACAACAAA TAAAAAACGA 262708 468 5.84e-06 CTCCACGAAC TCACCAATTAACGCCATCAAC CATACTGCAA 7192 461 7.27e-06 TCTTGTGAGC ACATCAACCATCAACATCACA TCCGACAAAC 6330 461 7.27e-06 ACTCTTCAAT CTCCCCACAACAAGCAACGAC GTCGAAAAAC 6004 470 7.27e-06 ACAGATATTA TCTAAAAAAAGCATCATCAAA ACAACAAACA 12182 480 7.27e-06 CTTCCATCAA CAAACACATAATATCAACAAA 26082 285 8.09e-06 TTCTGTGAAA CCCACCAGACACTGCGCCAAC AGGTCATACT 24569 425 8.09e-06 TCCACCGAGC TCACAAATTCACACCACCGCC ACCACCGCCA 6773 440 8.99e-06 AAGTATCCTT CGCCACACGCTCATAAACAAC TCTACTACAC 12162 472 8.99e-06 ATACATCATA CACTACAATCAATACAACAAT CATTAACC 10295 354 8.99e-06 GATGAAATCC CATCAAAAGAGCAGCATCAAC ATCTGTCAGG 7023 10 9.98e-06 CGAAAAGAT CGAAGCAGAAAAGACAACGAC TGAATGCCCC 21370 414 1.11e-05 ATCATGCCCA CGAAACGAGAGCAACAGCAAC ACAAGTCAGG 24408 479 1.35e-05 AATTGATACA TCTACCACCAAACTCATCAAC A 4596 61 1.49e-05 AAATACTGGC ACTTGCCAGCAAGACAACGAC GAAAAAACAA 21272 448 1.49e-05 AGAAAAGTTG AGATCAAGAAACCACAACACA CGCACACTAT 4771 453 1.65e-05 ATTGTTTCCT CCCGCCGACATCGCCAACGAC GTCCAACACT 24443 186 1.65e-05 CGTCAGAATT TCCTACCGAAAAAGCACAAAC AGATGCACCA 25464 440 1.81e-05 ACCATCCATA CGATACCGATACACCACCAAC GATACAGGAA 23433 418 3.15e-05 AATACCAAAC TCATCGAATATCATCATCACA TCACATCACA 261727 418 3.44e-05 AATCAAAAGC AACCTCATTCACAGCATCGAC AAATACACCG 2425 470 3.44e-05 TCCAACAGAT ACACAAGATACACACATCAAA CATCAACAAG 24064 381 3.44e-05 AGGGCGATTT TGCTGCCAACACTTCACAAAA ATTCACCTCC 4705 447 4.09e-05 TAGTATACAC ATCAAAGCAATAACCAACACA AGAATCTACT 8203 265 4.85e-05 AAGCCAAAGC CGTCATGTGCAAAACACCAAA ACGCAGCGGC 260926 341 4.85e-05 TCAATGATCC AGCAGCAATCACAGCGGCAAA CGATAACTGT 10133 241 5.72e-05 ACAAGCCGAC CCCCCATCCACCAACAACGCC TCGAACGCAT 3482 34 6.72e-05 ATTGCAATGC ACATCCGTAAAGATCATCACA ATCAGAATAT 1388 260 6.72e-05 CGACTCACTC ACTGCCCATCACATCATCCAC ATGATAAGAG 10992 98 7.86e-05 TTGTCTTGAT CGTCACAAGATTTGCACCACC GTTGATGAGA 25864 289 8.49e-05 CGGCCACGAA CAACCATCGATAAACATCAAC TTATCTTCTA 24014 472 8.49e-05 AACTTCATTG TGCCACAACCAAGCAAAAAAC TGCAGACA 10286 477 9.17e-05 TCCATCACGC TCTACGACACCCATCGACAAC ATC 6774 480 1.07e-04 CAAACACATT ATTGAACAACTCGACAACACC 9990 230 1.15e-04 AGTCATAGAT TTTTCGAAAAAATGCAACACA GGAATCGTGG 7236 472 1.15e-04 GATTTACCAT CATAACACACAACCCACAGAA AATGCACC 261036 480 1.23e-04 TATCACATTG CTAACCCTTCAAAACATAGAA 4782 480 1.33e-04 GCACACAAAC CCAATTCTGCATAACAACAAC 31391 121 1.42e-04 AAGGCAGCAG ACAACAAAAAGATGCATCAAT GGAAAGAGCT 12193 353 1.53e-04 CGCTATTCCA CCGCCGACCCACTCAAACAAA ATTGGCTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 36420 5.1e-09 431_[+1]_48 36911 1.3e-08 23_[+1]_456 3243 1.3e-08 470_[+1]_9 1053 2.9e-08 20_[+1]_459 8927 5.2e-08 429_[+1]_50 12168 1.1e-07 274_[+1]_205 10181 1.3e-07 454_[+1]_25 4147 2.4e-07 452_[+1]_27 2053 2.4e-07 418_[+1]_61 8905 3.3e-07 188_[+1]_291 10180 3.3e-07 473_[+1]_6 5147 4.5e-07 476_[+1]_3 bd1852 1.4e-06 413_[+1]_66 10083 1.4e-06 369_[+1]_110 8205 1.8e-06 377_[+1]_102 4300 1.8e-06 342_[+1]_137 1052 1.8e-06 460_[+1]_19 7484 2e-06 476_[+1]_3 22734 2.3e-06 221_[+1]_258 1415 2.6e-06 37_[+1]_442 11420 2.9e-06 469_[+1]_10 1055 3.3e-06 416_[+1]_63 bd1670 3.7e-06 266_[+1]_213 37127 3.7e-06 43_[+1]_436 33883 3.7e-06 272_[+1]_207 25821 3.7e-06 474_[+1]_5 11130 3.7e-06 471_[+1]_8 bd886 4.2e-06 176_[+1]_303 25912 4.2e-06 449_[+1]_30 6580 4.7e-06 459_[+1]_20 1054 5.2e-06 35_[+1]_444 262708 5.8e-06 467_[+1]_12 7192 7.3e-06 460_[+1]_19 6330 7.3e-06 460_[+1]_19 6004 7.3e-06 469_[+1]_10 12182 7.3e-06 479_[+1] 26082 8.1e-06 284_[+1]_195 24569 8.1e-06 424_[+1]_55 6773 9e-06 439_[+1]_40 12162 9e-06 471_[+1]_8 10295 9e-06 353_[+1]_126 7023 1e-05 9_[+1]_470 21370 1.1e-05 413_[+1]_66 24408 1.4e-05 478_[+1]_1 4596 1.5e-05 60_[+1]_419 21272 1.5e-05 447_[+1]_32 4771 1.6e-05 452_[+1]_27 24443 1.6e-05 185_[+1]_294 25464 1.8e-05 439_[+1]_40 23433 3.2e-05 417_[+1]_62 261727 3.4e-05 417_[+1]_62 2425 3.4e-05 469_[+1]_10 24064 3.4e-05 380_[+1]_99 4705 4.1e-05 446_[+1]_33 8203 4.8e-05 264_[+1]_215 260926 4.8e-05 340_[+1]_139 10133 5.7e-05 240_[+1]_239 3482 6.7e-05 33_[+1]_446 1388 6.7e-05 259_[+1]_220 10992 7.9e-05 97_[+1]_382 25864 8.5e-05 288_[+1]_191 24014 8.5e-05 471_[+1]_8 10286 9.2e-05 476_[+1]_3 6774 0.00011 479_[+1] 9990 0.00011 229_[+1]_250 7236 0.00011 471_[+1]_8 261036 0.00012 479_[+1] 4782 0.00013 479_[+1] 31391 0.00014 120_[+1]_359 12193 0.00015 352_[+1]_127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=70 36420 ( 432) ACACAACAACACAACAACAAA 1 36911 ( 24) ACAGACAACAACAACAACAAC 1 3243 ( 471) ACCTCCGATAACAACAACAAC 1 1053 ( 21) CGCCCCAACCAAAGCACCAAA 1 8927 ( 430) ACTCAACAACACATCAACAAC 1 12168 ( 275) TCAAACACAAACACCACCACC 1 10181 ( 455) CAACAAACTCACAACACCAAA 1 4147 ( 453) TGAAACAACAACATCATCAAA 1 2053 ( 419) AGCCACCCACAAAACAACACA 1 8905 ( 189) ACCTTCACTCACAGCAACAAC 1 10180 ( 474) CGCTGCAATCAATACAACAAC 1 5147 ( 477) ATAAACATACACATCAACAAC 1 bd1852 ( 414) TCATGAAACAACTCCAACAAC 1 10083 ( 370) CACAGCAACCACCACACCAAA 1 8205 ( 378) CCCTACCACCAGACCACCACC 1 4300 ( 343) CCCCAAGACAAAGCCAACACC 1 1052 ( 461) CACCAACATCACTTCACCAAA 1 7484 ( 477) ACGAACAAAACAAACAACAAC 1 22734 ( 222) CCTATCAAGCACGACACCAAA 1 1415 ( 38) AGCAGACCAAACTCCAACAAC 1 11420 ( 470) AGATAGCAGAACACCAACACC 1 1055 ( 417) CCCACCAATCTCATCAAAACA 1 bd1670 ( 267) CCCAGCGGCAACACCAACGAA 1 37127 ( 44) CACTCCAATCAAAGCACAAAA 1 33883 ( 273) CGACATAACCAGAACAACAAC 1 25821 ( 475) TGATACACGCAAAGCAACGAA 1 11130 ( 472) CCAACACAACCAACCACCGAC 1 bd886 ( 177) TCCGCCGAAAACACCAAAAAA 1 25912 ( 450) ATACACGAACTCTACAACAAA 1 6580 ( 460) CCAACCAAAAGTATCATCAAC 1 1054 ( 36) CAACAGACAACAAACAACAAA 1 262708 ( 468) TCACCAATTAACGCCATCAAC 1 7192 ( 461) ACATCAACCATCAACATCACA 1 6330 ( 461) CTCCCCACAACAAGCAACGAC 1 6004 ( 470) TCTAAAAAAAGCATCATCAAA 1 12182 ( 480) CAAACACATAATATCAACAAA 1 26082 ( 285) CCCACCAGACACTGCGCCAAC 1 24569 ( 425) TCACAAATTCACACCACCGCC 1 6773 ( 440) CGCCACACGCTCATAAACAAC 1 12162 ( 472) CACTACAATCAATACAACAAT 1 10295 ( 354) CATCAAAAGAGCAGCATCAAC 1 7023 ( 10) CGAAGCAGAAAAGACAACGAC 1 21370 ( 414) CGAAACGAGAGCAACAGCAAC 1 24408 ( 479) TCTACCACCAAACTCATCAAC 1 4596 ( 61) ACTTGCCAGCAAGACAACGAC 1 21272 ( 448) AGATCAAGAAACCACAACACA 1 4771 ( 453) CCCGCCGACATCGCCAACGAC 1 24443 ( 186) TCCTACCGAAAAAGCACAAAC 1 25464 ( 440) CGATACCGATACACCACCAAC 1 23433 ( 418) TCATCGAATATCATCATCACA 1 261727 ( 418) AACCTCATTCACAGCATCGAC 1 2425 ( 470) ACACAAGATACACACATCAAA 1 24064 ( 381) TGCTGCCAACACTTCACAAAA 1 4705 ( 447) ATCAAAGCAATAACCAACACA 1 8203 ( 265) CGTCATGTGCAAAACACCAAA 1 260926 ( 341) AGCAGCAATCACAGCGGCAAA 1 10133 ( 241) CCCCCATCCACCAACAACGCC 1 3482 ( 34) ACATCCGTAAAGATCATCACA 1 1388 ( 260) ACTGCCCATCACATCATCCAC 1 10992 ( 98) CGTCACAAGATTTGCACCACC 1 25864 ( 289) CAACCATCGATAAACATCAAC 1 24014 ( 472) TGCCACAACCAAGCAAAAAAC 1 10286 ( 477) TCTACGACACCCATCGACAAC 1 6774 ( 480) ATTGAACAACTCGACAACACC 1 9990 ( 230) TTTTCGAAAAAATGCAACACA 1 7236 ( 472) CATAACACACAACCCACAGAA 1 261036 ( 480) CTAACCCTTCAAAACATAGAA 1 4782 ( 480) CCAATTCTGCATAACAACAAC 1 31391 ( 121) ACAACAAAAAGATGCATCAAT 1 12193 ( 353) CCGCCGACCCACTCAAACAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44640 bayes= 10.701 E= 1.3e-037 22 105 -1277 -38 -78 109 21 -148 62 71 -296 -59 34 53 -164 -12 76 65 -79 -229 15 133 -138 -270 108 9 -50 -329 104 9 -138 -129 51 -9 -50 -20 85 113 -1277 -429 134 -119 -164 -97 34 129 -238 -229 125 -167 -96 -70 40 9 -26 -38 -265 207 -1277 -1277 183 -1277 -238 -1277 93 9 -296 -38 -124 196 -1277 -1277 159 -399 -38 -1277 151 1 -1277 -1277 67 125 -1277 -329 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 70 E= 1.3e-037 0.314286 0.471429 0.000000 0.214286 0.157143 0.485714 0.257143 0.100000 0.414286 0.371429 0.028571 0.185714 0.342857 0.328571 0.071429 0.257143 0.457143 0.357143 0.128571 0.057143 0.300000 0.571429 0.085714 0.042857 0.571429 0.242857 0.157143 0.028571 0.557143 0.242857 0.085714 0.114286 0.385714 0.214286 0.157143 0.242857 0.485714 0.500000 0.000000 0.014286 0.685714 0.100000 0.071429 0.142857 0.342857 0.557143 0.042857 0.057143 0.642857 0.071429 0.114286 0.171429 0.357143 0.242857 0.185714 0.214286 0.042857 0.957143 0.000000 0.000000 0.957143 0.000000 0.042857 0.000000 0.514286 0.242857 0.028571 0.214286 0.114286 0.885714 0.000000 0.000000 0.814286 0.014286 0.171429 0.000000 0.771429 0.228571 0.000000 0.000000 0.428571 0.542857 0.000000 0.028571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CAT][CG][AC][ACT][AC][CA][AC][AC][ATC][CA]A[CA]A[ACT]CA[ACT]CA[AC][CA] -------------------------------------------------------------------------------- Time 60.10 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 20 sites = 30 llr = 384 E-value = 4.2e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 553::1:1:::7a12::23: pos.-specific C 4135:2a5:aa::2717135 probability G :122:6::6::3::11:323 matrix T 1333a::44::::7:73422 bits 2.2 ** 1.9 * ** 1.7 * * ** * 1.5 * * ** * Relative 1.3 * * ** * Entropy 1.1 * * ***** (18.5 bits) 0.9 *** ***** * * 0.6 ************** * 0.4 * ************** * 0.2 ** *************** * 0.0 -------------------- Multilevel AAACTGCCGCCAATCTCTCC consensus CTCT C TT G CA TGAG sequence T TT G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 1202 427 3.63e-09 GCATAAACAG AATCTCCTTCCAATCTCTCC TCGCCAGTTT 4147 382 7.69e-09 TTGGAAACTA CAGTTGCTGCCAATCTCAAC TCAAATGGTA 25821 409 9.20e-09 TAAAATGGTG AACCTGCTGCCAATCTTCAC CTCCACTTCC 264191 327 1.09e-08 ATCAGCGACG CACCTGCCGCCGACATCGCC TTCTCTCAAA 7236 440 1.29e-08 GCCAATCTCT AAGTTGCTGCCAATCTCTGT TTGATTTACC 7024 357 1.29e-08 GGCGAAACCT CACCTCCCTCCAATCTCTGG AATTGAGGTT 262708 1 2.82e-08 . CCTTTGCCTCCAATCTCTCG AAGTTTTCTG bd1670 68 8.42e-08 TCTCGCGCCC AAACTGCCTCCAAACTCCTC CCTCCAACCA 3882 340 1.08e-07 CCTCCTCACC AAACTACCTCCGATCTCCAC AGGTTACAAA 5147 312 1.54e-07 TTTTTGCCGA CTGTTGCCTCCAATCTTTCT CTGACCAAGC 10992 308 1.73e-07 ACACGAGGGA ATAGTGCTGCCGACCTCTTG AACACCAAGG 8205 339 1.93e-07 GATTATGTGC CATTTGCTGCCGATCTTCGG CGACCGAGAG 3243 424 2.16e-07 ACTCCTCAAT GTGTTGCTGCCAATCTCGAC GACGAGAGAA 25864 113 2.16e-07 CTCAAATCTA AACCTACCTCCAATCGCGAG AGTTGAGCGA 1055 391 4.93e-07 GTCTCCTCGT CACCTGCTGCCGACCCTGTT TGTCCTCCCA 24569 121 5.96e-07 GAGCAAGTCG ATGTTCCCGCCAATTTCGCC AAATCCGTTG 25464 277 8.58e-07 CTTGCCCAAA AAAGTGCTGCCAATGTTGAT GCTGCCAATG 23263 380 1.11e-06 AACGCATCCC TTTCTCCCTCCAATATCGTC GGCTTGGCAT 12192 125 1.21e-06 CACTTGTGAG AATGTCCATCCAATCGCTCC CTCGTTTGCA bd886 37 1.54e-06 GGGTGATGGT CGTCTCCCGCCAATATTTGG CAGTGCACTC 10180 378 1.67e-06 CGCTCGCTGA CGACTACCGCCGACCTCACT GCAATGCTAC 23433 17 2.44e-06 CGGCGATGCG ATGCTGCTGCCGATGTGGCG ACAAGACTCA 10083 343 2.63e-06 TTTCGCCGAA AATGTGTTGCCAATCTTTGG GCGTGAGCAC 4300 313 3.48e-06 GCTGATTTTC TCCCTGCCGCCGACACCGAC GACGACATTG 3482 369 3.48e-06 ACTCGGTCAC CCCTTCCCGCCAAAACCTCC AATTCTGTGC 25912 315 3.48e-06 GGCCAACCTT CTCTTGCATCCAATCTAGCT TGGGCGATTT 7192 289 3.73e-06 TCACACACTG ACATTGCATCCAAACTCAAG CCCTTCTAAA 1305 319 3.73e-06 TCTCGCCGAT CTTCTACCTCCGACCCTTTC ACAACTCTCC 9549 48 4.26e-06 ACTTGCTGCA AAACTGCTGCCGCCCGCATC ATAGCTATCA 23641 309 4.85e-06 GCACTGATGG AAAGTGCTGCCAATAACATT GGGATATGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 1202 3.6e-09 426_[+2]_54 4147 7.7e-09 381_[+2]_99 25821 9.2e-09 408_[+2]_72 264191 1.1e-08 326_[+2]_154 7236 1.3e-08 439_[+2]_41 7024 1.3e-08 356_[+2]_124 262708 2.8e-08 [+2]_480 bd1670 8.4e-08 67_[+2]_413 3882 1.1e-07 339_[+2]_141 5147 1.5e-07 311_[+2]_169 10992 1.7e-07 307_[+2]_173 8205 1.9e-07 338_[+2]_142 3243 2.2e-07 423_[+2]_57 25864 2.2e-07 112_[+2]_368 1055 4.9e-07 390_[+2]_90 24569 6e-07 120_[+2]_360 25464 8.6e-07 276_[+2]_204 23263 1.1e-06 379_[+2]_101 12192 1.2e-06 124_[+2]_356 bd886 1.5e-06 36_[+2]_444 10180 1.7e-06 377_[+2]_103 23433 2.4e-06 16_[+2]_464 10083 2.6e-06 342_[+2]_138 4300 3.5e-06 312_[+2]_168 3482 3.5e-06 368_[+2]_112 25912 3.5e-06 314_[+2]_166 7192 3.7e-06 288_[+2]_192 1305 3.7e-06 318_[+2]_162 9549 4.3e-06 47_[+2]_433 23641 4.9e-06 308_[+2]_172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=20 seqs=30 1202 ( 427) AATCTCCTTCCAATCTCTCC 1 4147 ( 382) CAGTTGCTGCCAATCTCAAC 1 25821 ( 409) AACCTGCTGCCAATCTTCAC 1 264191 ( 327) CACCTGCCGCCGACATCGCC 1 7236 ( 440) AAGTTGCTGCCAATCTCTGT 1 7024 ( 357) CACCTCCCTCCAATCTCTGG 1 262708 ( 1) CCTTTGCCTCCAATCTCTCG 1 bd1670 ( 68) AAACTGCCTCCAAACTCCTC 1 3882 ( 340) AAACTACCTCCGATCTCCAC 1 5147 ( 312) CTGTTGCCTCCAATCTTTCT 1 10992 ( 308) ATAGTGCTGCCGACCTCTTG 1 8205 ( 339) CATTTGCTGCCGATCTTCGG 1 3243 ( 424) GTGTTGCTGCCAATCTCGAC 1 25864 ( 113) AACCTACCTCCAATCGCGAG 1 1055 ( 391) CACCTGCTGCCGACCCTGTT 1 24569 ( 121) ATGTTCCCGCCAATTTCGCC 1 25464 ( 277) AAAGTGCTGCCAATGTTGAT 1 23263 ( 380) TTTCTCCCTCCAATATCGTC 1 12192 ( 125) AATGTCCATCCAATCGCTCC 1 bd886 ( 37) CGTCTCCCGCCAATATTTGG 1 10180 ( 378) CGACTACCGCCGACCTCACT 1 23433 ( 17) ATGCTGCTGCCGATGTGGCG 1 10083 ( 343) AATGTGTTGCCAATCTTTGG 1 4300 ( 313) TCCCTGCCGCCGACACCGAC 1 3482 ( 369) CCCTTCCCGCCAAAACCTCC 1 25912 ( 315) CTCTTGCATCCAATCTAGCT 1 7192 ( 289) ACATTGCATCCAAACTCAAG 1 1305 ( 319) CTTCTACCTCCGACCCTTTC 1 9549 ( 48) AAACTGCTGCCGCCCGCATC 1 23641 ( 309) AAAGTGCTGCCAATAACATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 44733 bayes= 11.2158 E= 4.2e-020 89 81 -274 -207 98 -77 -174 -7 -2 23 -16 -7 -1155 113 -42 25 -1155 -1155 -1155 184 -102 4 151 -1155 -1155 209 -1155 -306 -143 104 -1155 63 -1155 -1155 143 52 -1155 213 -1155 -1155 -1155 213 -1155 -1155 130 -1155 58 -1155 184 -277 -1155 -1155 -143 4 -1155 125 -43 162 -174 -306 -301 -77 -116 139 -301 155 -274 -7 -70 -77 58 39 -2 55 -42 -26 -1155 104 43 -26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 30 E= 4.2e-020 0.500000 0.400000 0.033333 0.066667 0.533333 0.133333 0.066667 0.266667 0.266667 0.266667 0.200000 0.266667 0.000000 0.500000 0.166667 0.333333 0.000000 0.000000 0.000000 1.000000 0.133333 0.233333 0.633333 0.000000 0.000000 0.966667 0.000000 0.033333 0.100000 0.466667 0.000000 0.433333 0.000000 0.000000 0.600000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.966667 0.033333 0.000000 0.000000 0.100000 0.233333 0.000000 0.666667 0.200000 0.700000 0.066667 0.033333 0.033333 0.133333 0.100000 0.733333 0.033333 0.666667 0.033333 0.266667 0.166667 0.133333 0.333333 0.366667 0.266667 0.333333 0.166667 0.233333 0.000000 0.466667 0.300000 0.233333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [AC][AT][ACTG][CT]T[GC]C[CT][GT]CC[AG]A[TC][CA]T[CT][TG][CAT][CGT] -------------------------------------------------------------------------------- Time 119.00 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 43 llr = 476 E-value = 1.3e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :1:4::7:1454:343134:: pos.-specific C 22::1:::::::22:11:::2 probability G 53733a1576356342871a7 matrix T 25325:342:2122241:5:2 bits 2.2 1.9 * * 1.7 * * 1.5 * * Relative 1.3 * * Entropy 1.1 * * ** * (16.0 bits) 0.9 * * * * ** ** 0.6 * ***** ** ***** 0.4 * *********** * ***** 0.2 ************* ******* 0.0 --------------------- Multilevel GTGATGAGGGAGGGATGGTGG consensus CGTGG TTTAGACAGA AA sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 8926 58 3.21e-08 TGCTTGGGTG GATAGGAGGAGGGGGAGGAGG AGTGAGATGG 9549 298 3.79e-08 AGATCCTGGC GTTGGGAGGAAACCGTGGTGG TTGGTTGCAC 7192 166 3.79e-08 CGTTGTCTCG TCGAGGAGGAAGGCAAGGAGG AGGGAAGCCA 12197 215 3.79e-08 TCCGAGTAGT GTGGTGAGTAAATGGAGGTGG GATATGCTGT 1052 151 6.10e-08 ATGCAAGAAT GTTGTGATGGAAGGAAGATGC GTCAGAAGGA 1975 50 7.11e-08 GCGGTACGCC CGGTGGAGGGAGCGGTGAAGG CGGAGGCGCC 3243 94 9.58e-08 GAGGTTGCTG CTGGTGAGTGAGCGTAGGAGG AACAGGCGCC 4147 28 1.11e-07 TTGCGGTCGG GAGGTGTTGGTGGAATGGAGG TGATGTTTGG 12193 119 1.11e-07 TGAATGAGAT TTGAGGTTGGAGGGAGGAAGG TCCTCTAACT 4596 222 1.94e-07 ACCAGAAGAG AGGATGATGGAGGCGTGGAGG GAGGAACGTG 4705 228 2.22e-07 AGTTGGTAGC GGTAGGAGTGGTGAGAGGTGG CAGTCAGTGA 10992 44 3.73e-07 CATGTTGGCT CTGTTGAGTGAGTGATGATGG GAGACACAAG 7087 303 4.78e-07 CGTTGAGCGG TTGAGGAGAGAGGAGGGGTGC AGGGGCACAC 264191 122 6.84e-07 GCTCCCATTG TTGATGATGGAGGAATAGTGC GTTGTTAGAA 6580 303 7.69e-07 CACATTTTTC GCGATGAGCGATGGTTGGAGG GAGGATGGAA 10133 173 8.62e-07 GTCTCTTGTT CCTGTGATGGAAGAGTGATGT TGATGTGTGA 3646 317 1.08e-06 ATAAACGTTT GTTGTGTTGAGAGGAAGATGT ATTGTATCAC 12162 355 1.08e-06 ATCATTTGAG GCGATGATGGATGTGATGTGG AGTCCACTTG 7023 231 2.51e-06 TCTGCGAGCG TTGAAGAGGAGACAAAGGAGG ACGACGCAGT 6330 290 2.51e-06 TATCAAGAAA GGGGTGTTGGAGGTTGGAGGG AATATTGGGA 7236 18 2.77e-06 ATCGGTGTGG CCAATGATGAAGGAGGGGTGG GAATACTCAT 9990 1 3.37e-06 . GGTATGGGGAGGCAACGGTGG ATGTGATGGC 4300 248 3.37e-06 TGTGGCCGTG GTGGTGTGAGGAGCAGGAAGC ATCCGCGTGT 3882 18 3.37e-06 ATTTCCACTC GAGATGATGGTACAAAGAAGT ACTCTGTCTT 7024 259 3.71e-06 TGGTTTCTCT GTGAGGAGGTGAGAGGGAAGC TTTTCGAGCA 10181 22 4.48e-06 GCGTTTGCTA CAGTGGAGAGAACGATGATGG CTAAGAACTT 21370 446 5.38e-06 CAAGTCAGGC TTGTCGAGTGAGTAGAGGAGC ACACCCCAAT 10083 81 5.38e-06 CTCGACGAAG CTGACGTGTGGTGTGTGATGG CGGCGATGTG 9764 360 6.44e-06 GTGGTATGTT GTGTGGAGTGTACCTAGGTGT AGGACATAAT 1937 65 6.44e-06 TTAATGGTGA TTTTGAAGGGAGCGATGGTGG TGTGTAGGCA 6774 90 1.08e-05 CGCTTTGGGA GGTTGGAGAGTTGGGCGGAGG ACATGCCGAG 1201 296 1.27e-05 GTATGCGAAA CTGGCGAGGAGAGATTGGAAG GAGATTCTGT 6004 14 1.38e-05 GTTGTTACTG TGGAGGATGAGAGCAGAGTGT TTCTAGCGGC 1053 467 1.38e-05 ACTGAAAGAG GAGGCGATGAGAGCATCGTGC ATAGCGCAGA 10180 71 1.49e-05 TGGATTTGTT GTTATGTAGGGGGTTTGGTGT TGTGAGTTTG 11130 339 1.74e-05 CGTCGTCGGC GTGATGTCGAGACGGGCGTGG TATCTTTGGC 24014 316 2.03e-05 TTTTGTTGGA GGGGTGTTCGTTTGAAGATGG TTAGATAAAA 23263 272 2.03e-05 TTGGGTGTCG TCTGCGGGGGGGGAGACGAGG GCCAGCAAGA 2053 27 2.19e-05 TTGTTGCGAC GCGATGGTGATGTTTTGAAGG CTCGGAGACG 8905 351 2.36e-05 GTGAAGAAGG GGTGTGTGTAAGTTGTTGAGG TCTGAGGTTT 10295 74 2.73e-05 GCTGCCTTAC CGGGTGTTGGTAGGGCAGGGG GCAGGACGTC 33883 479 3.89e-05 GTTGCTTTGG TTGTGGATGAAAGTATTGGGC A 4547 268 4.16e-05 ATTATTGCAT CGTTTGATTATGTCAAGGTGT CGACTGTATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 8926 3.2e-08 57_[+3]_422 9549 3.8e-08 297_[+3]_182 7192 3.8e-08 165_[+3]_314 12197 3.8e-08 214_[+3]_265 1052 6.1e-08 150_[+3]_329 1975 7.1e-08 49_[+3]_430 3243 9.6e-08 93_[+3]_386 4147 1.1e-07 27_[+3]_452 12193 1.1e-07 118_[+3]_361 4596 1.9e-07 221_[+3]_258 4705 2.2e-07 227_[+3]_252 10992 3.7e-07 43_[+3]_436 7087 4.8e-07 302_[+3]_177 264191 6.8e-07 121_[+3]_358 6580 7.7e-07 302_[+3]_177 10133 8.6e-07 172_[+3]_307 3646 1.1e-06 316_[+3]_163 12162 1.1e-06 354_[+3]_125 7023 2.5e-06 230_[+3]_249 6330 2.5e-06 289_[+3]_190 7236 2.8e-06 17_[+3]_462 9990 3.4e-06 [+3]_479 4300 3.4e-06 247_[+3]_232 3882 3.4e-06 17_[+3]_462 7024 3.7e-06 258_[+3]_221 10181 4.5e-06 21_[+3]_458 21370 5.4e-06 445_[+3]_34 10083 5.4e-06 80_[+3]_399 9764 6.4e-06 359_[+3]_120 1937 6.4e-06 64_[+3]_415 6774 1.1e-05 89_[+3]_390 1201 1.3e-05 295_[+3]_184 6004 1.4e-05 13_[+3]_466 1053 1.4e-05 466_[+3]_13 10180 1.5e-05 70_[+3]_409 11130 1.7e-05 338_[+3]_141 24014 2e-05 315_[+3]_164 23263 2e-05 271_[+3]_208 2053 2.2e-05 26_[+3]_453 8905 2.4e-05 350_[+3]_129 10295 2.7e-05 73_[+3]_406 33883 3.9e-05 478_[+3]_1 4547 4.2e-05 267_[+3]_212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=43 8926 ( 58) GATAGGAGGAGGGGGAGGAGG 1 9549 ( 298) GTTGGGAGGAAACCGTGGTGG 1 7192 ( 166) TCGAGGAGGAAGGCAAGGAGG 1 12197 ( 215) GTGGTGAGTAAATGGAGGTGG 1 1052 ( 151) GTTGTGATGGAAGGAAGATGC 1 1975 ( 50) CGGTGGAGGGAGCGGTGAAGG 1 3243 ( 94) CTGGTGAGTGAGCGTAGGAGG 1 4147 ( 28) GAGGTGTTGGTGGAATGGAGG 1 12193 ( 119) TTGAGGTTGGAGGGAGGAAGG 1 4596 ( 222) AGGATGATGGAGGCGTGGAGG 1 4705 ( 228) GGTAGGAGTGGTGAGAGGTGG 1 10992 ( 44) CTGTTGAGTGAGTGATGATGG 1 7087 ( 303) TTGAGGAGAGAGGAGGGGTGC 1 264191 ( 122) TTGATGATGGAGGAATAGTGC 1 6580 ( 303) GCGATGAGCGATGGTTGGAGG 1 10133 ( 173) CCTGTGATGGAAGAGTGATGT 1 3646 ( 317) GTTGTGTTGAGAGGAAGATGT 1 12162 ( 355) GCGATGATGGATGTGATGTGG 1 7023 ( 231) TTGAAGAGGAGACAAAGGAGG 1 6330 ( 290) GGGGTGTTGGAGGTTGGAGGG 1 7236 ( 18) CCAATGATGAAGGAGGGGTGG 1 9990 ( 1) GGTATGGGGAGGCAACGGTGG 1 4300 ( 248) GTGGTGTGAGGAGCAGGAAGC 1 3882 ( 18) GAGATGATGGTACAAAGAAGT 1 7024 ( 259) GTGAGGAGGTGAGAGGGAAGC 1 10181 ( 22) CAGTGGAGAGAACGATGATGG 1 21370 ( 446) TTGTCGAGTGAGTAGAGGAGC 1 10083 ( 81) CTGACGTGTGGTGTGTGATGG 1 9764 ( 360) GTGTGGAGTGTACCTAGGTGT 1 1937 ( 65) TTTTGAAGGGAGCGATGGTGG 1 6774 ( 90) GGTTGGAGAGTTGGGCGGAGG 1 1201 ( 296) CTGGCGAGGAGAGATTGGAAG 1 6004 ( 14) TGGAGGATGAGAGCAGAGTGT 1 1053 ( 467) GAGGCGATGAGAGCATCGTGC 1 10180 ( 71) GTTATGTAGGGGGTTTGGTGT 1 11130 ( 339) GTGATGTCGAGACGGGCGTGG 1 24014 ( 316) GGGGTGTTCGTTTGAAGATGG 1 23263 ( 272) TCTGCGGGGGGGGAGACGAGG 1 2053 ( 27) GCGATGGTGATGTTTTGAAGG 1 8905 ( 351) GGTGTGTGTAAGTTGTTGAGG 1 10295 ( 74) CGGGTGTTGGTAGGGCAGGGG 1 33883 ( 479) TTGTGGATGAAAGTATTGGGC 1 4547 ( 268) CGTTTGATTATGTCAAGGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44640 bayes= 11.0258 E= 1.3e-015 -353 3 120 -26 -122 -48 20 73 -353 -1207 160 11 71 -1207 65 -42 -353 -97 55 94 -353 -1207 213 -1207 132 -1207 -167 -13 -353 -329 126 58 -154 -229 155 -42 46 -1207 144 -358 85 -1207 55 -59 55 -1207 106 -100 -1207 3 144 -78 16 -29 65 -78 63 -1207 91 -78 37 -171 -26 50 -195 -171 183 -200 27 -1207 160 -1207 63 -1207 -167 87 -353 -1207 213 -1207 -1207 -29 155 -78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 43 E= 1.3e-015 0.023256 0.232558 0.511628 0.232558 0.116279 0.162791 0.255814 0.465116 0.023256 0.000000 0.674419 0.302326 0.441860 0.000000 0.348837 0.209302 0.023256 0.116279 0.325581 0.534884 0.023256 0.000000 0.976744 0.000000 0.674419 0.000000 0.069767 0.255814 0.023256 0.023256 0.534884 0.418605 0.093023 0.046512 0.651163 0.209302 0.372093 0.000000 0.604651 0.023256 0.488372 0.000000 0.325581 0.186047 0.395349 0.000000 0.465116 0.139535 0.000000 0.232558 0.604651 0.162791 0.302326 0.186047 0.348837 0.162791 0.418605 0.000000 0.418605 0.162791 0.348837 0.069767 0.186047 0.395349 0.069767 0.069767 0.790698 0.069767 0.325581 0.000000 0.674419 0.000000 0.418605 0.000000 0.069767 0.511628 0.023256 0.000000 0.976744 0.000000 0.000000 0.186047 0.651163 0.162791 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [GCT][TG][GT][AGT][TG]G[AT][GT][GT][GA][AG][GA][GC][GA][AG][TA]G[GA][TA]GG -------------------------------------------------------------------------------- Time 176.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10083 4.75e-07 80_[+3(5.38e-06)]_241_\ [+2(2.63e-06)]_7_[+1(1.38e-06)]_73_[+2(3.95e-05)]_17 10133 4.91e-04 172_[+3(8.62e-07)]_13_\ [+3(7.45e-05)]_13_[+1(5.72e-05)]_239 10180 2.19e-07 70_[+3(1.49e-05)]_286_\ [+2(1.67e-06)]_76_[+1(3.34e-07)]_6 10181 1.21e-05 21_[+3(4.48e-06)]_412_\ [+1(1.27e-07)]_25 10286 4.56e-02 476_[+1(9.17e-05)]_3 10295 1.71e-03 73_[+3(2.73e-05)]_259_\ [+1(8.99e-06)]_126 1052 3.65e-06 150_[+3(6.10e-08)]_50_\ [+3(1.38e-05)]_218_[+1(1.79e-06)]_19 1053 1.34e-05 20_[+1(2.91e-08)]_226_\ [+1(1.99e-05)]_178_[+3(1.38e-05)]_13 1054 3.70e-02 35_[+1(5.23e-06)]_444 1055 3.40e-05 390_[+2(4.93e-07)]_6_[+1(3.30e-06)]_\ 63 10654 8.93e-02 500 10992 1.37e-07 43_[+3(3.73e-07)]_33_[+1(7.86e-05)]_\ 12_[+3(2.73e-05)]_156_[+2(1.73e-07)]_173 11130 7.78e-05 86_[+2(9.60e-05)]_232_\ [+3(1.74e-05)]_90_[+1(8.49e-05)]_1_[+1(3.71e-06)]_8 11420 3.01e-03 469_[+1(2.93e-06)]_10 1201 6.62e-02 295_[+3(1.27e-05)]_184 1202 3.58e-05 426_[+2(3.63e-09)]_54 12162 1.39e-04 27_[+1(7.27e-05)]_306_\ [+3(1.08e-06)]_96_[+1(8.99e-06)]_8 12168 1.03e-03 274_[+1(1.07e-07)]_172_\ [+1(3.89e-07)]_12 12182 2.89e-02 357_[+1(6.72e-05)]_101_\ [+1(7.27e-06)] 12192 1.41e-02 124_[+2(1.21e-06)]_356 12193 7.84e-05 54_[+3(1.61e-05)]_43_[+3(1.11e-07)]_\ 361 12197 5.89e-04 214_[+3(3.79e-08)]_265 1305 3.37e-03 318_[+2(3.73e-06)]_162 1388 3.30e-02 259_[+1(6.72e-05)]_220 1415 8.00e-04 37_[+1(2.59e-06)]_45_[+2(9.60e-05)]_\ 377 1937 1.56e-02 64_[+3(6.44e-06)]_53_[+3(1.88e-05)]_\ 341 1975 1.65e-03 49_[+3(7.11e-08)]_430 2053 6.65e-06 26_[+3(2.19e-05)]_65_[+2(7.03e-05)]_\ 286_[+1(2.45e-07)]_61 20847 7.54e-01 500 21272 3.54e-03 353_[+1(3.44e-05)]_73_\ [+1(1.49e-05)]_32 21370 3.83e-04 126_[+3(2.03e-05)]_266_\ [+1(1.11e-05)]_11_[+3(5.38e-06)]_34 22734 1.77e-02 221_[+1(2.29e-06)]_258 23263 3.31e-04 271_[+3(2.03e-05)]_87_\ [+2(1.11e-06)]_101 23433 4.73e-04 16_[+2(2.44e-06)]_381_\ [+1(3.15e-05)]_62 23434 6.15e-01 500 23641 8.60e-03 308_[+2(4.85e-06)]_172 24014 1.17e-03 315_[+3(2.03e-05)]_37_\ [+2(8.75e-05)]_78_[+1(8.49e-05)]_8 24064 3.32e-03 380_[+1(3.44e-05)]_99 24160 7.94e-01 500 2425 1.39e-01 469_[+1(3.44e-05)]_10 24408 7.40e-03 478_[+1(1.35e-05)]_1 24443 9.64e-02 185_[+1(1.65e-05)]_219_\ [+1(6.72e-05)]_54 24569 5.10e-05 120_[+2(5.96e-07)]_284_\ [+1(8.09e-06)]_55 25464 1.37e-04 276_[+2(8.58e-07)]_143_\ [+1(1.81e-05)]_40 25821 1.32e-06 408_[+2(9.20e-09)]_46_\ [+1(3.71e-06)]_5 25864 2.58e-04 112_[+2(2.16e-07)]_156_\ [+1(8.49e-05)]_191 25912 2.33e-04 314_[+2(3.48e-06)]_115_\ [+1(4.17e-06)]_30 26082 3.02e-02 284_[+1(8.09e-06)]_195 260926 4.95e-02 340_[+1(4.85e-05)]_139 261036 3.16e-02 500 261727 1.84e-02 417_[+1(3.44e-05)]_62 262708 3.95e-06 [+2(2.82e-08)]_447_[+1(5.84e-06)]_\ 12 264191 2.17e-07 121_[+3(6.84e-07)]_184_\ [+2(1.09e-08)]_154 31391 5.59e-02 500 3243 1.50e-11 93_[+3(9.58e-08)]_309_\ [+2(2.16e-07)]_27_[+1(1.26e-08)]_9 33883 1.00e-03 272_[+1(3.71e-06)]_185_\ [+3(3.89e-05)]_1 3482 1.97e-03 33_[+1(6.72e-05)]_314_\ [+2(3.48e-06)]_112 36420 3.95e-05 333_[+1(3.44e-05)]_77_\ [+1(5.05e-09)]_48 3646 6.14e-03 140_[+3(1.17e-05)]_155_\ [+3(1.08e-06)]_163 36911 4.18e-05 23_[+1(1.26e-08)]_164_\ [+1(8.99e-06)]_271 37127 7.18e-03 43_[+1(3.71e-06)]_436 3882 5.68e-06 17_[+3(3.37e-06)]_301_\ [+2(1.08e-07)]_141 4147 1.21e-11 27_[+3(1.11e-07)]_29_[+3(8.41e-05)]_\ 6_[+3(6.17e-05)]_256_[+2(7.69e-09)]_51_[+1(2.45e-07)]_5_[+1(3.76e-05)]_1 4300 5.07e-07 247_[+3(3.37e-06)]_44_\ [+2(3.48e-06)]_10_[+1(1.79e-06)]_137 4547 2.03e-01 267_[+3(4.16e-05)]_212 4596 1.29e-05 60_[+1(1.49e-05)]_140_\ [+3(1.94e-07)]_258 4705 1.16e-04 227_[+3(2.22e-07)]_198_\ [+1(4.09e-05)]_33 4771 1.78e-04 447_[+2(1.11e-06)]_33 4782 3.59e-02 500 5147 1.67e-06 311_[+2(1.54e-07)]_145_\ [+1(4.52e-07)]_3 5607 3.75e-01 500 6004 2.29e-04 13_[+3(1.38e-05)]_435_\ [+1(7.27e-06)]_10 6330 3.27e-05 21_[+3(7.92e-05)]_247_\ [+3(2.51e-06)]_150_[+1(7.27e-06)]_19 6580 2.06e-06 302_[+3(7.69e-07)]_9_[+2(2.79e-05)]_\ 107_[+1(4.67e-06)]_20 6773 3.86e-02 439_[+1(8.99e-06)]_40 6774 6.46e-03 89_[+3(1.08e-05)]_87_[+3(2.36e-05)]_\ 282 7023 4.79e-04 9_[+1(9.98e-06)]_200_[+3(2.51e-06)]_\ 168_[+3(2.51e-06)]_60 7024 1.19e-06 33_[+3(8.41e-05)]_89_[+3(1.74e-05)]_\ 94_[+3(3.71e-06)]_77_[+2(1.29e-08)]_124 7087 4.56e-03 302_[+3(4.78e-07)]_177 7192 3.25e-08 165_[+3(3.79e-08)]_102_\ [+2(3.73e-06)]_152_[+1(7.27e-06)]_19 7236 1.12e-07 17_[+3(2.77e-06)]_200_\ [+3(1.61e-05)]_180_[+2(1.29e-08)]_41 7484 8.42e-04 476_[+1(2.03e-06)]_3 8203 4.27e-02 264_[+1(4.85e-05)]_215 8205 9.15e-06 338_[+2(1.93e-07)]_19_\ [+1(1.79e-06)]_102 8905 4.91e-05 188_[+1(3.34e-07)]_141_\ [+3(2.36e-05)]_89_[+1(2.88e-05)]_19 8926 3.31e-04 57_[+3(3.21e-08)]_422 8927 1.01e-04 429_[+1(5.19e-08)]_50 9549 1.22e-06 47_[+2(4.26e-06)]_82_[+3(8.93e-05)]_\ 127_[+3(3.79e-08)]_182 9764 2.01e-03 359_[+3(6.44e-06)]_120 9990 8.47e-04 [+3(3.37e-06)]_479 bd1670 8.97e-06 67_[+2(8.42e-08)]_94_[+2(9.60e-05)]_\ 65_[+1(3.71e-06)]_213 bd1852 5.99e-03 413_[+1(1.38e-06)]_66 bd886 4.71e-05 36_[+2(1.54e-06)]_120_\ [+1(4.17e-06)]_303 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************