105 PTZ00248
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
105 chr_9 PTZ00248 395794 397050 + PTZ00248
NCBI ID Ensembl Genomes exon ID
7449310 Thaps105.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0287
Normalized Mean Residue
Thaps_bicluster_0114
0.48
(L7Ae) Ribosomal_L7Ae superfamily
0.9313
(RM12) Ribosomal_L7_L12
0.9092
PRK14293
0.9089
(GGPS5) Trans_IPPS_HT
0.904
hypothetical protein
0.903
GrpE
0.9002
(RL32) Ribosomal_L32_L32e
0.8998
eRF1
0.8939
(TCP1) TCP1_gamma
0.8909
(Tp_CSF5) CSP_CDS
0.89
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-... cl09927 139.642 5.85E-41 42 - 117 specific 239899
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 139.642 5.85E-41 42 - 117 superfamily 263921
EIF_2_alpha superfamily Eukaryotic translation initiation factor 2 alpha subunit; These proteins share a region of... - 138.431 4.20E-40 153 - 274 superfamily 254274
EIF_2_alpha superfamily Eukaryotic translation initiation factor 2 alpha subunit; These proteins share a region of... - 138.431 4.20E-40 153 - 274 superfamily 254274
PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional - 399.037 1.31E-138 31 - 338 multi-dom 240329
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_34538 PHATRDRAFT_34538 267694 201433 366908 Cre12.g490000.t1.2 AT2G40290.1 356047
KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141
GO:0003723 GO:0003743 GO:0005850 GO:0006412 -

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

eukaryotic translation initiation factor 2 complex

Details: 
Complex of three heterogeneous polypeptide chains, that form a ternary complex with initiator methionyl-tRNA and GTP. This ternary complex binds to free 40S subunit, which subsequently binds the 5' end of mRNA.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP
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