11075 PRK12999
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
11075 chr_19a_19 PRK12999 55336 59769 + PRK12999
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0355
Normalized Mean Residue
Thaps_bicluster_0059
0.44
(bd833) NA
0.8663
(bd1851) NA
0.842
hypothetical protein
0.8278
(bd884) NA
0.8257
COG3899
0.8233
COG0523
0.8086
(bd1954) NA
0.7992
(bd1845) NA
0.7939
(bd1058) NA
0.7913
Chorein_N
0.7894
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain; This family includes the... cl18962 451.885 5.96E-149 604 - 888 specific 163675
DRE_TIM_metallolyase superfamily DRE-TIM metallolyase superfamily; The DRE-TIM metallolyase superfamily includes 2-isopropylmalate... - 451.885 5.96E-149 604 - 888 superfamily 267315
biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-... cl11404 101.724 2.57E-25 1168 - 1233 specific 133459
Biotinyl_lipoyl_domains superfamily Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the... - 101.724 2.57E-25 1168 - 1233 superfamily 264355
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 235.274 2.35E-70 167 - 376 superfamily 266590
PYC_OADA superfamily Conserved carboxylase domain; This domain represents a conserved region in pyruvate carboxylase (... - 220.068 3.60E-65 901 - 1108 superfamily 251291
PYC_OADA superfamily Conserved carboxylase domain; This domain represents a conserved region in pyruvate carboxylase (... - 220.068 3.60E-65 901 - 1108 superfamily 251291
Biotin_carb_C Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... cl08365 155.649 9.49E-44 391 - 496 specific 214878
Biotin_carb_C superfamily Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... - 155.649 9.49E-44 391 - 496 superfamily 263607
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 153.023 8.96E-43 53 - 160 superfamily 249744
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
Metabolic pathways map01100
GO:0003824 GO:0009374 GO:0005524 GO:0008152 GO:0016874 GO:0004736 GO:0005737 GO:0006094 -

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

biotin binding

Details: 
Interacting selectively and non-covalently with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions.
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

ligase activity

Details: 
Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

pyruvate carboxylase activity

Details: 
Catalysis of the reaction: ATP + bicarbonate + pyruvate = ADP + 2 H(+) + oxaloacetate + phosphate.
GO Category: 
MF

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

gluconeogenesis

Details: 
The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
GO Category: 
BP
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