15123 UCH
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
15123 chr_3 UCH 1494732 1501658 + UCH

Synonyms

NCBI ID Ensembl Genomes exon ID
7451298 Thaps15123.3, Thaps15123.2, Thaps15123.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0127

Most Highly Correlated Transcripts

261448

PLN02205
0.8278

25288

Sec6 superfamily
0.8163

16613

S_TKc
0.8157

8262

hypothetical protein
0.8148

268232

COG3899
0.81

bd874

(bd874) NA
0.8071

9449

hypothetical protein
0.8053

268606

TBCC
0.8007

23602

hypothetical protein
0.7985

263945

Patatin_and_cPLA2 superfamily
0.7982

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular... cl02553 180.561 1.72E-50 1284 - 1620 specific 239139
Peptidase_C19 superfamily Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... - 180.561 1.72E-50 1284 - 1620 superfamily 261337
DUSP DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the N-... cl12116 67.8393 2.81E-13 810 - 906 specific 253684
DUSP superfamily DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the N-... - 67.8393 2.81E-13 810 - 906 superfamily 264555
UCH Ubiquitin carboxyl-terminal hydrolase; Ubiquitin carboxyl-terminal hydrolase. - 204.564 7.88E-58 1282 - 1619 multi-dom 249862

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_2936 PHATRDRAFT_2936 209274 252978 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Endocytosis map04144

GO Terms

GO:0004197 GO:0004221 GO:0006511 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004221

ubiquitin thiolesterase activity

Details: 
Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol.
GO Category: 
MF

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

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