15142 PT_UbiA_Cox10
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
15142 chr_6 PT_UbiA_Cox10 1685135 1686649 - PT_UbiA_Cox10
NCBI ID Ensembl Genomes exon ID
7442783 Thaps15142.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0111
PRK13357
0.9346
rpsI
0.9346
PRK05279
0.9263
hypothetical protein
0.9247
rplO
0.9224
Ribosomal_L7_L12
0.9217
IGPD superfamily
0.9213
nascent-polypeptide-associated complex alpha polypeptide-like protein
0.92
LSm1
0.9183
(RT5) rpsE_bact
0.9112
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PT_UbiA_Cox10 Protoheme IX farnesyltransferase; Protoheme IX farnesyltransferase (also called heme O synthase,... cl00337 323.622 2.31E-107 115 - 389 specific 260120
PT_UbiA superfamily UbiA family of prenyltransferases (PTases); Many characterized members of the UbiA... - 323.622 2.31E-107 115 - 389 superfamily 260365
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_32550 PHATRDRAFT_32550 273202 295096 466261 Cre12.g516350.t1.2 AT2G44520.1 540850
KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110
GO:0004659 GO:0016021 GO:0006783 GO:0008495 GO:0004660 GO:0004661 GO:0004662 GO:0004663 GO:0008318 GO:0008412 GO:0046428 -

prenyltransferase activity

Details: 
Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).
GO Category: 
MF

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

heme biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors.
GO Category: 
BP

protoheme IX farnesyltransferase activity

Details: 
Catalysis of the reaction: protoheme IX + (2E,6E)-farnesyl diphosphate + H2O = heme o + diphosphate.
GO Category: 
MF

protein farnesyltransferase activity

Details: 
Catalysis of the reaction: farnesyl diphosphate + protein-cysteine = S-farnesyl protein + diphosphate.
GO Category: 
MF

protein geranylgeranyltransferase activity

Details: 
Catalysis of the covalent addition of a geranylgeranyl (20-carbon isoprenoid) group via thioether linkages to a cysteine residue at or near the C terminus of a protein.
GO Category: 
MF

CAAX-protein geranylgeranyltransferase activity

Details: 
Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families.
GO Category: 
MF

Rab geranylgeranyltransferase activity

Details: 
Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family.
GO Category: 
MF

protein prenyltransferase activity

Details: 
Catalysis of the covalent addition of an isoprenoid group such as a farnesyl or geranylgeranyl group via thioether linkages to a cysteine residue in a protein.
GO Category: 
MF

4-hydroxybenzoate octaprenyltransferase activity

Details: 
Catalysis of the reaction: farnesylfarnesylgeranyl diphosphate + p-hydroxybenzoate = 3-octaprenyl-4-hydroxybenzoate + diphosphate.
GO Category: 
MF

1,4-dihydroxy-2-naphthoate octaprenyltransferase activity

Details: 
Catalysis of the reaction: 1,4-dihydroxy-2-naphthoate + polyprenylpyrophosphate = dimethylmenaquinone + diphosphate + CO2.
GO Category: 
MF
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