1845 (RPN9) PCI
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
1845 chr_1 (RPN9) PCI 2564963 2566210 + PCI
NCBI ID Ensembl Genomes exon ID
7449094 Thaps1845.2, Thaps1845.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199
Normalized Mean Residue
Thaps_bicluster_0098
0.36
TIM_phosphate_binding superfamily
0.9196
(RPT6) RPT1
0.9147
FeThRed_B
0.8807
FBPase
0.8771
(RPN3) Rpn3_C
0.8696
(PSA4) Ntn_hydrolase superfamily
0.8693
(PSA7) proteasome_alpha_type_7
0.8685
Peptidase_C19 superfamily
0.8677
PLN02350
0.8676
0.8675
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PCI PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). cl02111 61.4784 6.00E-12 231 - 337 specific 250589
PCI superfamily PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). - 61.4784 6.00E-12 231 - 337 superfamily 261183
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35065 PHATRDRAFT_35065 205073 328521 442322 Cre17.g734516.t1.1 AT5G45620.1 554654
KEGG description KEGG Pathway
Proteasome map03050
GO:0003677 GO:0003700 GO:0006352 GO:0006355 GO:0016987 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

DNA-templated transcription, initiation

Details: 
Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO Category: 
BP

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

sigma factor activity

Details: 
A sigma factor is the promoter specificity subunit of eubacterial-type multisubunit RNA polymerases, those whose core subunit composition is often described as alpha(2)-beta-beta-prime. (This type of multisubunit RNA polymerase complex is known to be found in eubacteria and plant plastids). Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, this binds specifically to promoter sequences, with the sigma factor making sequence specific contacts with the promoter elements. The sigma subunit is released from the elongating form of the polymerase and is thus free to act catalytically for multiple RNA polymerase core enzymes.
GO Category: 
MF
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