19890 CbpAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
19890	chr_13	CbpA	227615	228646	-	CbpA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452992	Thaps19890.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0148

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0033	0.48	0.000000021 0.013

Most Highly Correlated Transcripts

4027 hypothetical protein 0.8726	7299 hypothetical protein 0.8698	37336 Beach 0.8666	8003 PIG-L 0.8646	37810 GMPK 0.8645	261261 ArfGap 0.8605
9569 hypothetical protein 0.8581	6664 hypothetical protein 0.8571	6446 hypothetical protein 0.8507	38230 MYSc 0.8468

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DnaJ		DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play...	cl02542	65.6445	5.33E-14	115 - 170	specific	99751
DnaJ superfamily		DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play...	-	65.6445	5.33E-14	115 - 170	superfamily	261333
CbpA		DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]	-	76.016	2.10E-16	111 - 298	multi-dom	225124

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45384	PHATRDRAFT_45384	Not available	258113	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006457 GO:0031072 GO:0051082 -

Add comment

Log in to post comments