20920 S2P-M50_like_2Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20920	chr_1	S2P-M50_like_2	2008998	2012118	+	S2P-M50_like_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443164	Thaps20920.4, Thaps20920.6, Thaps20920.2, Thaps20920.1, Thaps20920.5, Thaps20920.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0172

Most Highly Correlated Transcripts

4580 FIG superfamily 0.9267	4333 hypothetical protein 0.906	25944 p450 superfamily 0.9027	4571 P4Hc 0.8994	3842 hypothetical protein 0.8956	9265 hypothetical protein 0.8933
8130 hypothetical protein 0.8917	32491 p450 superfamily 0.8913	12836 EEP superfamily 0.8901	263653 P-ATPase-V 0.89

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S2P-M50_like_2		Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which...	cl10020	95.7598	3.07E-22	638 - 867	specific	100081
S2P-M50 superfamily		Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane...	-	95.7598	3.07E-22	638 - 867	superfamily	245232
Peptidase_M50		Peptidase family M50; Peptidase family M50.	-	61.3096	9.81E-11	656 - 864	multi-dom	251129

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44486	PHATRDRAFT_44486	258141	320829	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004222 GO:0006508 -

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