21277 Ion_trans
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21277 chr_2 Ion_trans 995245 998423 - Ion_trans

Synonyms

NCBI ID Ensembl Genomes exon ID
7444629 Thaps21277.2, Thaps21277.3, Thaps21277.1, Thaps21277.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0173

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0045
 0.44

Most Highly Correlated Transcripts

30701

PRK05279
0.9325

261400

NA
0.918

269624

TIM_phosphate_binding superfamily
0.9152

9115

DnaJ
0.8997

13393

PLN02321
0.8995

35136

NA
0.8934

5485

hypothetical protein
0.8919

36764

PRK05279
0.8893

4064

NADB_Rossmann superfamily
0.8841

264556

FBPase
0.8838

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ion_trans Ion transport protein; This family contains Sodium, Potassium, Calcium ion channels. This family is... - 85.0318 1.54E-18 711 - 842 multi-dom 249927
Ion_trans Ion transport protein; This family contains Sodium, Potassium, Calcium ion channels. This family is... - 85.0318 1.54E-18 711 - 842 multi-dom 249927

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_54164 PHATR_54164 Not available 207919 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005261 GO:0006812 GO:0016020 GO:0005216 GO:0006811 -

GO:0005261

cation channel activity

Details: 
Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient.
GO Category: 
MF

GO:0006812

cation transport

Details: 
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0005216

ion channel activity

Details: 
Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006811

ion transport

Details: 
The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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