21299 AFD_class_I superfamily
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
21299 chr_2 AFD_class_I superfamily 1101201 1103673 - AFD_class_I superfamily
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0122
Normalized Mean Residue
Thaps_bicluster_0060
0.47
(bd1841) CAP10 superfamily
0.9682
(bd415) arom_aa_hydroxylase superfamily
0.9198
(bd410) HNHc
0.9045
hypothetical protein
0.8835
(bd1756) NA
0.8712
(bd1839) NA
0.869
(bd1840) NA
0.8525
Tcp11 superfamily
0.8481
hypothetical protein
0.8385
(bd764) NA
0.8373
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 430.509 8.30E-144 153 - 699 superfamily 266508
CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites... - 292.058 1.72E-89 131 - 711 multi-dom 223395
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre13.g586000.t1.2 AT3G16170.1 555724
KEGG description KEGG Pathway
Not available Not available
GO:0003824 GO:0008152 GO:0016874 GO:0051340 -

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

ligase activity

Details: 
Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

regulation of ligase activity

Details: 
Any process that modulates the frequency, rate or extent of ligase activity, the catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6.
GO Category: 
BP
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