22248 PLN00162
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
22248 chr_4 PLN00162 1007800 1010617 - PLN00162
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0206
Normalized Mean Residue
Thaps_bicluster_0172
0.30
(bd843) NA
0.9189
CBS_like
0.9167
(bd1893) NA
0.9136
dak_ATP
0.9074
(bd463) Aa_trans superfamily
0.9059
(bd758) NA
0.9052
(bd1078) NA
0.9017
(bd687) NA
0.8996
PMT_2 superfamily
0.8986
(bd890) NA
0.8986
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sec23_C C-terminal Actin depolymerization factor-homology domain of Sec23; The C-terminal domain of the... cl15697 223.79 6.39E-69 608 - 728 specific 200443
ADF_gelsolin superfamily Actin depolymerization factor/cofilin- and gelsolin-like domains; Actin depolymerization factor/... - 223.79 6.39E-69 608 - 728 superfamily 265764
vWFA superfamily Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von... - 298.901 5.11E-95 133 - 379 superfamily 260163
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 109.158 5.67E-28 531 - 617 superfamily 252815
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 109.158 5.67E-28 531 - 617 superfamily 252815
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 96.4278 1.18E-23 398 - 497 superfamily 254596
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 96.4278 1.18E-23 398 - 497 superfamily 254596
zf-Sec23_Sec24 superfamily Sec23/Sec24 zinc finger; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the... - 77.6012 1.49E-17 61 - 101 superfamily 252812
zf-Sec23_Sec24 superfamily Sec23/Sec24 zinc finger; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the... - 77.6012 1.49E-17 61 - 101 superfamily 252812
PLN00162 transport protein sec23; Provisional - 1266.01 0 5 - 757 multi-dom 215083
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42673 PHATRDRAFT_42673 208848 69678 110979 Cre03.g180850.t1.2 AT2G21630.1 247465
KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141
GO:0008152 GO:0016491 GO:0005515 GO:0006886 GO:0006888 GO:0030127 -

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

ER to Golgi vesicle-mediated transport

Details: 
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO Category: 
BP

COPII vesicle coat

Details: 
One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.
GO Category: 
CC
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