23386 LsmAD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23386 chr_7 LsmAD 476665 479383 - LsmAD

Synonyms

NCBI ID Ensembl Genomes exon ID
7446220 Thaps23386.1, Thaps23386.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0251

Most Highly Correlated Transcripts

bd668

(bd668) NA
0.9549

bd529

(bd529) SNF2_N
0.9154

bd890

(bd890) NA
0.8965

12836

EEP superfamily
0.8931

bd1863

(bd1863) NA
0.8855

263997

(APA1) Adaptin_N
0.8838

bd843

(bd843) NA
0.8823

8762

SNF2_N
0.8822

40925

(RPB21) PRK08565
0.8818

bd624

(bd624) Glyco_transf_34 superfamily
0.8736

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LsmAD superfamily LsmAD domain; This domain is found associated with Lsm domain. - 98.1634 2.91E-24 358 - 424 superfamily 253887
LsmAD superfamily LsmAD domain; This domain is found associated with Lsm domain. - 98.1634 2.91E-24 358 - 424 superfamily 253887
SM-ATX superfamily Ataxin 2 SM domain; This SM domain is found in Ataxin-2. - 69.9684 2.25E-14 153 - 230 superfamily 258591
SM-ATX superfamily Ataxin 2 SM domain; This SM domain is found in Ataxin-2. - 69.9684 2.25E-14 153 - 230 superfamily 258591

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44892 PHATRDRAFT_44892 241763 Not available Not available Cre01.g063997.t1.1 AT3G14010.3 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004308 -

GO:0004308

exo-alpha-sialidase activity

Details: 
Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates.
GO Category: 
MF

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