24250 SLC5sbd_DUR3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24250 chr_10 SLC5sbd_DUR3 1016799 1019924 - SLC5sbd_DUR3

Synonyms

NCBI ID Ensembl Genomes exon ID
7449339 Thaps24250.2, Thaps24250.1, Thaps24250.3, Thaps24250.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0397

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0011
 0.46

Most Highly Correlated Transcripts

bd878

(bd878) AAT_like
0.8145

24806

hypothetical protein
0.7765

10425

hypothetical protein
0.7646

260761

HA
0.7612

264854

S_TKc
0.7457

260816

DAGK_acc superfamily
0.7343

25111

HA
0.734

267971

MORN superfamily
0.7323

13556

BglC
0.7268

3790

(CTL1) Mito_carr
0.7257

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SLC5sbd_DUR3 Na(+)/urea-polyamine cotransporter DUR3, and related proteins; solute-binding domain; Dur3 is the... cl00456 596.87 0 39 - 559 specific 212046
SLC5-6-like_sbd superfamily Solute carrier families 5 and 6-like; solute binding domain; This superfamily includes the solute-... - 596.87 0 39 - 559 superfamily 260433

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_768 PHATRDRAFT_768 224737 65285 440179 Cre08.g360200.t1.2 AT5G45380.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016020 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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