24510 ygfZ_signature
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24510 chr_12 ygfZ_signature 605492 607267 + ygfZ_signature

Synonyms

NCBI ID Ensembl Genomes exon ID
7445845 Thaps24510.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0225

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9528

25031

hypothetical protein
0.8893

21265

hypothetical protein
0.8755

21742

RNase_PH_RRP45
0.8697

22622

CCT
0.8677

268136

COG1054
0.8632

22348

hypothetical protein
0.8604

8144

hypothetical protein
0.8589

20643

hypothetical protein
0.8556

268118

WD40
0.8537

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ygfZ_signature superfamily folate-binding protein YgfZ; YgfZ is a protein from Escherichia coli, homologous to the glycine... - 80.6742 1.50E-18 291 - 353 superfamily 234167
ygfZ_signature superfamily folate-binding protein YgfZ; YgfZ is a protein from Escherichia coli, homologous to the glycine... - 80.6742 1.50E-18 291 - 353 superfamily 234167

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45164 PHATRDRAFT_45164 235752 199762 Not available Not available Not available 354565

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004047 GO:0005737 GO:0006546 -

GO:0004047

aminomethyltransferase activity

Details: 
Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006546

glycine catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid.
GO Category: 
BP

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