25042 AFD_class_I superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25042 chr_15 AFD_class_I superfamily 661592 663564 - AFD_class_I superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443953 Thaps25042.3, Thaps25042.2, Thaps25042.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0211

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0131
 0.35

Most Highly Correlated Transcripts

25022

AFD_class_I superfamily
0.9586

22820

Choline_transpo
0.942

270222

0.9076

34187

(ACAS2) PRK00174
0.8969

5098

hypothetical protein
0.8967

269147

NAD_binding_8 superfamily
0.879

8836

hypothetical protein
0.8781

7597

2A0111
0.8758

5246

hypothetical protein
0.8741

4270

Scramblase superfamily
0.8695

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 684.375 0 42 - 548 superfamily 266508
FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] - 419.415 4.77E-139 46 - 558 multi-dom 223953

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 318419 Not available Not available Not available 491045

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 GO:0004467 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004467

long-chain fatty acid-CoA ligase activity

Details: 
Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; a long-chain fatty acid is a fatty acid with a chain length between C13 and C22.
GO Category: 
MF

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