25669 EEP superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25669	chr_20	EEP superfamily	653553	656084	+	EEP superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443630	Thaps25669.4, Thaps25669.1, Thaps25669.2, Thaps25669.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0334

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0209	0.34	0.96 2100

Most Highly Correlated Transcripts

24243 hypothetical protein 0.8817	24230 hypothetical protein 0.8725	5604 hypothetical protein 0.8685	20989 hypothetical protein 0.8656	11106 hypothetical protein 0.8599	5557 DUS_like_FMN 0.8592
8004 Phytase-like 0.8557	21307 hypothetical protein 0.8551	22882 PUB 0.852	10906 hypothetical protein 0.8505

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
C2		C2 domain; The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-...	cl14603	75.5663	3.21E-16	531 - 636	specific	175973
C2 superfamily		C2 domain; The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-...	-	75.5663	3.21E-16	531 - 636	superfamily	265430
EEP superfamily		Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; This large superfamily includes the...	-	142.086	1.37E-37	228 - 503	superfamily	260458

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_43917	PHATR_43917	265110	321876	100688	Not available	Not available	506819

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004437 -

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