26031 SHMT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26031 chr_14 SHMT 846636 848543 - SHMT

Synonyms

NCBI ID Ensembl Genomes exon ID
7451580 Thaps26031.2, Thaps26031.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0291

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0279
 0.39

Most Highly Correlated Transcripts

15950

Peptidase_A22B superfamily
0.8858

28682

TCP1_theta
0.8757

40233

(Tp_CSF3) CSP_CDS
0.858

264164

Porin3_Tom40
0.8561

12899

AAA
0.848

4462

hypothetical protein
0.8469

4487

hypothetical protein
0.8465

16746

Mito_carr
0.8463

39710

PTZ00258
0.8452

36007

Aldolase_II superfamily
0.8394

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-... cl18945 580.698 0 26 - 458 specific 99733
AAT_I superfamily Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent... - 580.698 0 26 - 458 superfamily 267298

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 303720 Not available Not available AT4G13890.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004372 GO:0006544 GO:0006563 -

GO:0004372

glycine hydroxymethyltransferase activity

Details: 
Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.
GO Category: 
MF

GO:0006544

glycine metabolic process

Details: 
The chemical reactions and pathways involving glycine, aminoethanoic acid.
GO Category: 
BP

GO:0006563

L-serine metabolic process

Details: 
The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
GO Category: 
BP

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