260891 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260891 chr_1 WD40 1160631 1162488 + WD40

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0368

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9925

24525

hypothetical protein
0.9338

36007

Aldolase_II superfamily
0.9222

264556

FBPase
0.9184

264598

AAA
0.9019

37497

cysE
0.8869

11085

hypothetical protein
0.8856

16295

FBPase
0.8847

30701

PRK05279
0.884

268358

hypothetical protein
0.8836

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 183.69 8.50E-54 196 - 474 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 183.69 8.50E-54 196 - 474 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 137.142 1.21E-35 197 - 474 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21983 PHATRDRAFT_21983 208304 235790 108000 Cre16.g662800.t1.2 AT2G41500.1 314758

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0008380 -

GO:0008380

RNA splicing

Details: 
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
GO Category: 
BP

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