261778 MFS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261778 chr_3 MFS 928086 930475 - MFS

Synonyms

NCBI ID Ensembl Genomes exon ID
7448740 Thaps261778.2, Thaps261778.1, Thaps261778.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0158

Most Highly Correlated Transcripts

bd922

(bd922) NA
0.8463

12836

EEP superfamily
0.8391

34590

nt_trans superfamily
0.8367

6552

hypothetical protein
0.833

24939

hypothetical protein
0.832

261589

S49_Sppa_N_C
0.8297

bd874

(bd874) NA
0.8268

31075

PDEase_I
0.8247

24475

(RPT3) PTZ00454
0.824

3866

hypothetical protein
0.8185

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 117.8 9.23E-29 348 - 737 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 117.8 9.23E-29 348 - 737 superfamily 119392
MFS_1 Major Facilitator Superfamily; Major Facilitator Superfamily. - 107.506 2.28E-25 348 - 703 multi-dom 254360

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44298 PHATRDRAFT_44298 157908 180065 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016021 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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