262083 Uup
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262083 chr_4 Uup 523074 526282 + Uup

Synonyms

NCBI ID Ensembl Genomes exon ID
7452596 Thaps262083.2, Thaps262083.3, Thaps262083.4, Thaps262083.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0324

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0083
 0.43

Most Highly Correlated Transcripts

270222

0.9455

22200

hypothetical protein
0.8072

17110

rbgA
0.7927

bd1667

(bd1667) Mpp10
0.7848

41829

PTZ00141
0.7739

bd1806

(bd1806) AAT_I superfamily
0.7736

36429

TLC
0.772

36576

TypA
0.7679

23718

hypothetical protein
0.7638

268271

PRK10867
0.7604

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 104.068 2.05E-25 652 - 944 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 104.068 2.05E-25 652 - 944 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 104.068 2.05E-25 652 - 944 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 104.068 2.05E-25 652 - 944 superfamily 266551
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 316.114 4.65E-96 411 - 957 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_27838 PHATRDRAFT_27838 174015 319462 437166 Cre14.g615950.t1.1 Not available 353552

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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