262348 53EXOc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262348 chr_4 53EXOc 2300527 2303115 + 53EXOc

Synonyms

NCBI ID Ensembl Genomes exon ID
7451412 Thaps262348.1, Thaps262348.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0198

Most Highly Correlated Transcripts

2927

hypothetical protein
0.9263

261431

ABC_ATPase superfamily
0.9207

17582

HAD-SF-IIA-hyp3
0.9183

23270

hypothetical protein
0.913

22679

CbiO
0.9123

16613

S_TKc
0.9119

7898

DUF676 superfamily
0.9117

8500

PRP38 superfamily
0.9116

22507

hypothetical protein
0.9116

23169

hypothetical protein
0.9111

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PIN_53EXO PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; The 5... cl14812 226.543 6.54E-69 518 - 680 specific 189029
PIN_SF superfamily PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a... - 226.543 6.54E-69 518 - 680 superfamily 265458
H3TH_53EXO H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; H3TH (... cl14815 110.952 7.13E-29 687 - 759 specific 188618
H3TH_StructSpec-5'-nucleases superfamily H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in... - 110.952 7.13E-29 687 - 759 superfamily 265460
53EXOc 5'-3' exonuclease; 5'-3' exonuclease. - 297.969 4.04E-94 517 - 766 multi-dom 214682

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17228 PHATRDRAFT_17228 194632 263530 463107 Not available AT3G52050.4 501578

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0004518 GO:0008409 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0004518

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

GO:0008409

5'-3' exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 5' end.
GO Category: 
MF

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