262574 (ssrp1) PH1_SSRP1-like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262574 chr_5 (ssrp1) PH1_SSRP1-like 1498835 1501607 - PH1_SSRP1-like

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0087

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0176
 0.34

Most Highly Correlated Transcripts

3158

HepA
0.9334

bd439

(bd439) POLBc_alpha
0.9287

bd529

(bd529) SNF2_N
0.9097

2085

hypothetical protein
0.909

262526

MCM
0.9078

bd624

(bd624) Glyco_transf_34 superfamily
0.9054

bd843

(bd843) NA
0.9034

bd1214

(bd1214) KISc_C_terminal
0.8997

bd1983

(bd1983) RecA-like_NTPases superfamily
0.8959

34379

NIF
0.8922

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PH1_SSRP1-like Structure Specific Recognition protein 1 (SSRP1) Pleckstrin homology (PH) domain, repeat 1; SSRP1... cl17171 198.917 9.52E-60 184 - 321 specific 241384
PH-like superfamily Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and... - 156.5 6.20E-45 323 - 429 superfamily 266526
PH2_SSRP1-like Structure Specific Recognition protein 1 (SSRP1) Pleckstrin homology (PH) domain, repeat 2; SSRP1... cl17171 156.5 6.20E-45 323 - 429 specific 241385
PH-like superfamily Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and... - 156.5 6.20E-45 323 - 429 superfamily 266526
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 83.4461 3.13E-19 541 - 606 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 83.4461 3.13E-19 541 - 606 superfamily 260179
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 83.4461 3.13E-19 541 - 606 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 83.4461 3.13E-19 541 - 606 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11409 PHATRDRAFT_11409 156478 250897 414529 Cre11.g481050.t1.2 AT3G28730.1 348389

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006355 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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