263375 RpoD_Cterm
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
263375 chr_8 RpoD_Cterm 397689 399023 + RpoD_Cterm
NCBI ID Ensembl Genomes exon ID
7445567 Thaps263375.1, Thaps263375.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0214
Normalized Mean Residue
Thaps_bicluster_0137
0.33
PLN00128
0.8975
(SDH1) sdhB
0.8666
(NIT2) nit
0.8656
Aldo_ket_red
0.8633
hypothetical protein
0.8625
hypothetical protein
0.8618
DUF179
0.8593
hypothetical protein
0.8567
hypothetical protein
0.855
PTZ00430
0.8548
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain; This model represents the well-conserved C-... - 98.5292 4.00E-24 157 - 370 multi-dom 213709
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1251 PHATRDRAFT_bd1251 Not available Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003677 GO:0003700 GO:0006352 GO:0006355 GO:0016987 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

DNA-templated transcription, initiation

Details: 
Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO Category: 
BP

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

sigma factor activity

Details: 
A sigma factor is the promoter specificity subunit of eubacterial-type multisubunit RNA polymerases, those whose core subunit composition is often described as alpha(2)-beta-beta-prime. (This type of multisubunit RNA polymerase complex is known to be found in eubacteria and plant plastids). Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, this binds specifically to promoter sequences, with the sigma factor making sequence specific contacts with the promoter elements. The sigma subunit is released from the elongating form of the polymerase and is thus free to act catalytically for multiple RNA polymerase core enzymes.
GO Category: 
MF
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