263816 SNF2_N
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
263816 chr_11a SNF2_N 662591 667295 + SNF2_N
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0428
Normalized Mean Residue
Thaps_bicluster_0078
0.42
(bd1313) psbH
0.9212
(bd137) Motor_domain superfamily
0.9118
PUB
0.9032
SNF2_N
0.8897
HepA
0.8859
HepA
0.8847
DUF1162 superfamily
0.8828
Nucleotid_trans superfamily
0.8827
(Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein
0.8792
MYSc
0.8744
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 117.339 1.33E-30 412 - 543 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 117.339 1.33E-30 412 - 543 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 62.74 1.63E-11 92 - 257 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 62.74 1.63E-11 92 - 257 superfamily 266587
SNF2_N SNF2 family N-terminal domain; This domain is found in proteins involved in a variety of processes... - 261.837 4.79E-81 75 - 379 multi-dom 249654
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54310 PHATRDRAFT_54310 156509 178554 429120 Cre03.g158550.t1.2 Not available 470076
KEGG description KEGG Pathway
Not available Not available
GO:0003677 GO:0005524 GO:0000785 GO:0003682 GO:0005634 GO:0006333 GO:0008026 GO:0003676 GO:0004386 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

chromatin

Details: 
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
GO Category: 
CC

chromatin binding

Details: 
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

chromatin assembly or disassembly

Details: 
The formation or destruction of chromatin structures.
GO Category: 
BP

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF
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