26393 (ubc1) UBCc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26393 chr_12 (ubc1) UBCc 481218 482559 + UBCc

Synonyms

NCBI ID Ensembl Genomes exon ID
7445823 Thaps26393.1, Thaps26393.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0274

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0191
 0.44

Most Highly Correlated Transcripts

35541

Cis_IPPS
0.9163

268443

SAICAR_synt_Sc
0.913

19158

GRX_PICOT_like
0.9068

bd1806

(bd1806) AAT_I superfamily
0.9036

268859

(GGTB1) PLN03201
0.9013

268574

Tim17
0.9004

40200

TRX_reduct
0.8989

267979

HCO3_cotransp superfamily
0.8971

4372

hypothetical protein
0.8945

21706

S1_Rrp4
0.892

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated... cl00154 196.654 1.12E-64 17 - 145 specific 238117
UBCc superfamily Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated... - 196.654 1.12E-64 17 - 145 superfamily 260221

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_26750 PHATRDRAFT_26750 223245 302736 445078 Cre06.g294850.t1.2 AT2G02760.1 354949

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

GO:0004840

NA

Details: 
NA
GO Category: 
NA

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

Add comment

Log in to post comments