268271 PRK10867
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
268271 chr_2 PRK10867 1095944 1098067 + PRK10867
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0043
Normalized Mean Residue
Thaps_bicluster_0108
0.45
(GBP1) PRK09601
0.8845
hypothetical protein
0.8432
(cdc48-2) CDC48
0.8432
RPE65 superfamily
0.8427
PRK14293
0.8423
hypothetical protein
0.8417
hypothetical protein
0.841
Uup
0.8395
(secA) preprotein translocase subunit SecA
0.8393
UPF0051
0.838
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in... cl17203 283.666 3.28E-92 216 - 388 specific 239389
Fer4_NifH superfamily The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain.... - 283.666 3.28E-92 216 - 388 superfamily 266552
SRP_SPB superfamily Signal peptide binding domain; Signal peptide binding domain. - 96.0353 1.39E-23 441 - 545 superfamily 251653
SRP_SPB superfamily Signal peptide binding domain; Signal peptide binding domain. - 96.0353 1.39E-23 441 - 545 superfamily 251653
SRP54_N SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle... cl03758 70.2727 7.29E-15 116 - 193 specific 214941
SRP54_N superfamily SRP54-type protein, helical bundle domain; SRP54-type protein, helical bundle domain. - 70.2727 7.29E-15 116 - 193 superfamily 261873
PRK10867 signal recognition particle protein; Provisional - 618.247 0 108 - 556 multi-dom 236780
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35185 PHATRDRAFT_35185 189595 33302 Not available Cre11.g479750.t1.2 AT5G03940.1 Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003723 GO:0005525 GO:0005786 GO:0006614 GO:0008168 GO:0000166 GO:0017111 GO:0006605 -

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

signal recognition particle, endoplasmic reticulum targeting

Details: 
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
GO Category: 
CC

SRP-dependent cotranslational protein targeting to membrane

Details: 
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
GO Category: 
BP

methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group to an acceptor molecule.
GO Category: 
MF

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

protein targeting

Details: 
The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
GO Category: 
BP
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