268329 Synaptobrevin
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268329 chr_2 Synaptobrevin 1737434 1738050 - Synaptobrevin

Synonyms

NCBI ID Ensembl Genomes exon ID
7452293 Thaps268329.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0391

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

bd1058

(bd1058) NA
0.901

bd1841

(bd1841) CAP10 superfamily
0.8737

8445

hypothetical protein
0.8574

10624

hypothetical protein
0.8546

bd1786

(bd1786) GLTP superfamily
0.8471

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8429

8849

U-box superfamily
0.838

bd1808

(bd1808) NA
0.8369

bd737

(bd737) NA
0.8344

25713

hypothetical protein
0.833

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 64.868 1.62E-14 54 - 136 superfamily 250253
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 64.868 1.62E-14 54 - 136 superfamily 250253

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48591 PHATRDRAFT_48591 Not available Not available 226600 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016021 GO:0016192 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0016192

vesicle-mediated transport

Details: 
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO Category: 
BP

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