268552 AroE
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268552 chr_3 AroE 2002746 2004729 - AroE

Synonyms

NCBI ID Ensembl Genomes exon ID
7452079 Thaps268552.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0049

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0063
 0.47

Most Highly Correlated Transcripts

4524

DHQS
0.9165

268908

Trans_IPPS_HH
0.9133

16295

FBPase
0.9057

40995

phr2
0.9017

36525

PRK09427
0.9013

261400

NA
0.9007

36007

Aldolase_II superfamily
0.8999

268577

(GGTA1) PLN02789
0.8975

30701

PRK05279
0.8963

9037

hypothetical protein
0.8939

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase; Shikimate dehydrogenase (DH) is an amino acid DH... cl17226 103.12 1.91E-25 424 - 590 specific 133443
NAD_bind_amino_acid_DH superfamily NAD(P) binding domain of amino acid dehydrogenase-like proteins; Amino acid dehydrogenase(DH)-like... - 103.12 1.91E-25 424 - 590 superfamily 266569
DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase); Type I 3-dehydroquinase, (3-... cl17187 99.3363 1.37E-23 135 - 310 specific 188633
Aldolase_Class_I superfamily Class I aldolases; Class I aldolases. The class I aldolases use an active-site lysine which... - 99.3363 1.37E-23 135 - 310 superfamily 266539
Shikimate_dh_N superfamily Shikimate dehydrogenase substrate binding domain; This domain is the substrate binding domain of... - 99.5922 4.24E-25 325 - 407 superfamily 254837
Shikimate_dh_N superfamily Shikimate dehydrogenase substrate binding domain; This domain is the substrate binding domain of... - 99.5922 4.24E-25 325 - 407 superfamily 254837
AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] - 204.039 2.19E-60 320 - 604 multi-dom 223247

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_7664 PHATRDRAFT_7664 180245 283292 Not available Not available AT3G06350.1 343591

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003855 GO:0009073 GO:0004764 GO:0005737 GO:0016089 -

GO:0003855

3-dehydroquinate dehydratase activity

Details: 
Catalysis of the reaction: 3-dehydroquinate = 3-dehydroshikimate + H(2)O.
GO Category: 
MF

GO:0009073

aromatic amino acid family biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
GO Category: 
BP

GO:0004764

shikimate 3-dehydrogenase (NADP+) activity

Details: 
Catalysis of the reaction: shikimate + NADP+ = 3-dehydroshikimate + NADPH + H+.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0016089

NA

Details: 
NA
GO Category: 
NA

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