268559 COG1084
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268559 chr_3 COG1084 2087543 2089904 + COG1084

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0257
 0.20

Most Highly Correlated Transcripts

7265

PIN_SF superfamily
0.9617

22212

COG5638
0.9494

268689

RRM6_RBM19_RRM5_MRD1
0.9441

268688

hypothetical protein
0.9429

23354

RNA-binding protein of the pumilio family
0.9401

32807

DEADc
0.9397

39953

SrmB
0.9393

269776

Ribosomal_L1
0.9388

22203

(Tp_CCHH28) zf-C2H2_2
0.9336

24016

Ebp2 superfamily
0.9319

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NOG Nucleolar GTP-binding protein (NOG); NOG1 is a nucleolar GTP-binding protein present in eukaryotes... cl17170 291.001 1.03E-94 169 - 343 specific 206684
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 291.001 1.03E-94 169 - 343 superfamily 266525
NOGCT superfamily NOGCT (NUC087) domain; This C terminal domain is found in the NOG subfamily of nucleolar GTP-... - 84.2574 7.57E-20 406 - 451 superfamily 191952
NOGCT superfamily NOGCT (NUC087) domain; This C terminal domain is found in the NOG subfamily of nucleolar GTP-... - 84.2574 7.57E-20 406 - 451 superfamily 191952
COG1084 Predicted GTPase [General function prediction only] - 406.304 9.50E-137 5 - 346 multi-dom 224009

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30365 PHATRDRAFT_30365 181044 181740 466218 Cre10.g459500.t1.1 AT1G50920.1 359251

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0005525 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

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