268614 PseudoU_synth superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268614 chr_4 PseudoU_synth superfamily 297957 299679 + PseudoU_synth superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446758 Thaps268614.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0491

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0115
 0.37

Most Highly Correlated Transcripts

bd788

(bd788) NA
0.9094

bd1813

(bd1813) NA
0.9049

bd692

(bd692) NA
0.8988

bd930

(bd930) HA
0.8631

bd824

(bd824) NA
0.8598

bd1802

(bd1802) NA
0.8484

bd1748

(bd1748) NA
0.8337

bd739

(bd739) NA
0.8325

bd1801

(bd1801) NA
0.8243

bd738

(bd738) NA
0.8226

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 139.146 4.85E-38 103 - 463 superfamily 260207
truA tRNA pseudouridine synthase A; Validated - 137.195 3.22E-37 103 - 463 multi-dom 234577

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47935 PHATRDRAFT_47935 199175 318510 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009982 GO:0016439 -

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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