26893 (RS18) PTZ00134
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
26893 chr_2 (RS18) PTZ00134 100864 101685 + PTZ00134
NCBI ID Ensembl Genomes exon ID
7452156 Thaps26893.1, Thaps26893.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0046
Normalized Mean Residue
Thaps_bicluster_0205
0.26
(RL11A) PTZ00156
0.9457
(RS25) Ribosomal_S25
0.9331
(RL28) Ribosomal_L28e
0.9226
(RS15B) PTZ00096
0.9222
(RS24) PTZ00071
0.9136
(RS4) PLN00036
0.908
(RS23) Ribosomal_S23
0.9045
(RS16) PLN00210
0.9034
(RL35) Ribosomal_L29_HIP
0.9002
(RL26) KOW_RPL26
0.8997
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PTZ00134 40S ribosomal protein S18; Provisional cl00331 246.094 4.29E-84 1 - 144 specific 185469
Ribosomal_S13 superfamily Ribosomal protein S13/S18; This family includes ribosomal protein S13 from prokaryotes and S18 from... - 246.094 4.29E-84 1 - 144 superfamily 260360
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30486 PHATRDRAFT_30486 268465 246711 443828 Cre06.g272950.t1.1 AT4G09800.1 353469
KEGG description KEGG Pathway
Ribosome map03010
GO:0003723 GO:0003735 GO:0005622 GO:0005840 GO:0006412 -

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP
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