268988 (CPF3) crypto_DASH
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
268988 chr_6 (CPF3) crypto_DASH 266270 268295 - crypto_DASH
NCBI ID Ensembl Genomes exon ID
7451122 Thaps268988.1, Thaps268988.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0394
Normalized Mean Residue
Thaps_bicluster_0006
0.41
hypothetical protein
0.8986
hypothetical protein
0.8795
hypothetical protein
0.8542
NA
0.843
hypothetical protein
0.8296
EEP superfamily
0.8229
PolY superfamily
0.8226
alcohol_DH_class_III
0.8217
PTZ00430
0.8191
hypothetical protein
0.8186
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FAD_binding_7 superfamily FAD binding domain of DNA photolyase; FAD binding domain of DNA photolyase. - 247.162 5.21E-77 251 - 512 superfamily 251955
FAD_binding_7 superfamily FAD binding domain of DNA photolyase; FAD binding domain of DNA photolyase. - 247.162 5.21E-77 251 - 512 superfamily 251955
DNA_photolyase superfamily DNA photolyase; This domain binds a light harvesting cofactor. - 117.306 1.17E-30 12 - 207 superfamily 250195
DNA_photolyase superfamily DNA photolyase; This domain binds a light harvesting cofactor. - 117.306 1.17E-30 12 - 207 superfamily 250195
crypto_DASH cryptochrome, DASH family; Photolyases and cryptochromes are related flavoproteins. Photolyases... - 491.118 1.83E-169 9 - 474 multi-dom 234002
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 269244 190760 Not available Cre02.g078939.t1.1 AT5G24850.1 Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003913 GO:0006281 GO:0003904 -

DNA photolyase activity

Details: 
Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA.
GO Category: 
MF

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

deoxyribodipyrimidine photo-lyase activity

Details: 
Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light.
GO Category: 
MF
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