269004 PRTases_typeI
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269004 chr_6 PRTases_typeI 361681 362754 - PRTases_typeI

Synonyms

NCBI ID Ensembl Genomes exon ID
7451144 Thaps269004.1, Thaps269004.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0059

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0108
 0.45

Most Highly Correlated Transcripts

6010

AP_muniscins_like_MHD
0.91

bd1652

(bd1652) ABC_ATPase superfamily
0.9048

38472

HA2
0.9042

ThpsCp134

(rpl34) ribosomal protein L34
0.8929

ThpsCp135

(secA) preprotein translocase subunit SecA
0.8924

36007

Aldolase_II superfamily
0.8912

9049

hypothetical protein
0.8835

5996

N2227 superfamily
0.8797

268256

PLN02346
0.8748

30701

PRK05279
0.8717

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRTases_typeI Phosphoribosyl transferase (PRT)-type I domain; Phosphoribosyl transferase (PRT) domain. The type I... cl00309 77.0508 5.76E-18 102 - 238 specific 206754
PRTases_typeI superfamily Phosphoribosyl transferase (PRT)-type I domain; Phosphoribosyl transferase (PRT) domain. The type I... - 77.0508 5.76E-18 102 - 238 superfamily 260342

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46613 PHATRDRAFT_46613 193309 214560 79644 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009116 -

GO:0009116

nucleoside metabolic process

Details: 
The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
GO Category: 
BP

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