269347 (Fen1) PIN_FEN1
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
269347 chr_8 (Fen1) PIN_FEN1 452865 454335 - PIN_FEN1
NCBI ID Ensembl Genomes exon ID
7445577 Thaps269347.2, Thaps269347.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0315
GRX_PICOT_like
0.8868
hypothetical protein
0.8747
(MYB22)
0.8718
COG0398
0.8707
AAA
0.8696
(PSB3) proteasome_beta_type_3
0.8688
hypothetical protein
0.8655
M18_DAP
0.8623
(APM3) AP-3_Mu3_Cterm
0.8589
(APS4) APS2
0.8579
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PIN_FEN1 PIN domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5'... cl14812 329.85 1.57E-111 4 - 351 specific 189037
PIN_SF superfamily PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a... - 329.85 1.57E-111 4 - 351 superfamily 265458
H3TH_FEN1-Euk H3TH domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5&apos... cl14815 132.671 4.65E-38 228 - 295 specific 188627
H3TH_StructSpec-5'-nucleases superfamily H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in... - 132.671 4.65E-38 228 - 295 superfamily 265460
fen_arch flap structure-specific endonuclease; Endonuclease that cleaves the 5'-overhanging flap... - 281.445 1.21E-91 16 - 351 multi-dom 234306
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48638 PHATRDRAFT_48638 206746 260195 101628 Cre03.g145687.t1.1 AT5G26680.2 294028
KEGG description KEGG Pathway
Non-homologous end-joining map03450
GO:0003677 GO:0004518 GO:0006281 GO:0003923 GO:0016787 GO:0051336 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

GPI-anchor transamidase activity

Details: 
Catalysis of the formation of the linkage between a protein and a glycosylphosphatidylinositol anchor. The reaction probably occurs by subjecting a peptide bond to nucleophilic attack by the amino group of ethanolamine-GPI, transferring the protein from a signal peptide to the GPI anchor.
GO Category: 
MF

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

regulation of hydrolase activity

Details: 
Any process that modulates the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
BP
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