269942 SHMT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269942 chr_18 SHMT 322360 324155 - SHMT

Synonyms

NCBI ID Ensembl Genomes exon ID
7442966 Thaps269942.2, Thaps269942.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0216

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0159
 0.26

Most Highly Correlated Transcripts

270222

0.9138

39799

(GDCP) PLN02414
0.9053

31169

PRX_BCP
0.8605

38724

plant_peroxidase_like superfamily
0.8573

36208

(GDCT) PLN02319
0.8536

269147

NAD_binding_8 superfamily
0.8391

38608

SDR_a5
0.8337

35025

Lung_7-TM_R superfamily
0.8171

412

(ALAT_1) PTZ00377
0.8161

4108

hypothetical protein
0.8129

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-... cl18945 625.381 0 62 - 477 specific 99733
AAT_I superfamily Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent... - 625.381 0 62 - 477 superfamily 267298

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54015 PHATRDRAFT_54015 Not available Not available 429491 Not available Not available 361869

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004372 GO:0006544 GO:0006563 -

GO:0004372

glycine hydroxymethyltransferase activity

Details: 
Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.
GO Category: 
MF

GO:0006544

glycine metabolic process

Details: 
The chemical reactions and pathways involving glycine, aminoethanoic acid.
GO Category: 
BP

GO:0006563

L-serine metabolic process

Details: 
The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
GO Category: 
BP

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