27292 (RS4) PLN00036
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
27292 chr_2 (RS4) PLN00036 2372854 2373958 - PLN00036
NCBI ID Ensembl Genomes exon ID
7450467 Thaps27292.1, Thaps27292.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0047
Normalized Mean Residue
Thaps_bicluster_0227
0.33
(RL11A) PTZ00156
0.9579
(RS15B) PTZ00096
0.9496
(RS5) PTZ00091
0.9453
(rpl23) PTZ00054
0.9339
(RL26) KOW_RPL26
0.9316
(RL15) PTZ00026
0.9295
(RL32) Ribosomal_L32_L32e
0.9241
PTZ00129
0.9202
(RS24) PTZ00071
0.9182
(RL14) Ribosomal_L14e
0.9137
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KOW_RPS4 KOW motif of Ribosomal Protein S4 (RPS4); RPS4 plays a critical role in the core assembly of the... cl00354 91.8083 5.35E-24 175 - 229 specific 240511
KOW superfamily KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is... - 91.8083 5.35E-24 175 - 229 superfamily 260377
Ribosomal_S4e superfamily Ribosomal family S4e; Ribosomal family S4e. - 108.353 6.78E-30 94 - 168 superfamily 189761
Ribosomal_S4e superfamily Ribosomal family S4e; Ribosomal family S4e. - 108.353 6.78E-30 94 - 168 superfamily 189761
RS4NT superfamily RS4NT (NUC023) domain; This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is... - 71.524 8.73E-17 3 - 40 superfamily 254610
RS4NT superfamily RS4NT (NUC023) domain; This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is... - 71.524 8.73E-17 3 - 40 superfamily 254610
PLN00036 40S ribosomal protein S4; Provisional - 461.876 1.75E-165 1 - 261 multi-dom 177670
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17324 PHATRDRAFT_17324 276274 317633 55884 Cre06.g308250.t1.2 AT5G58420.1 356144
KEGG description KEGG Pathway
Ribosome map03010
GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0003723 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF
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