27686 PLN02750
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
27686 chr_3 PLN02750 2327560 2328972 + PLN02750

Synonyms

NCBI ID Ensembl Genomes exon ID
7443829 Thaps27686.2, Thaps27686.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0366

Most Highly Correlated Transcripts

21877

hypothetical protein
0.9082

1244

hypothetical protein
0.9048

9115

DnaJ
0.9012

38011

PKc_like superfamily
0.9009

263866

AAK superfamily
0.8924

4249

hypothetical protein
0.8887

21447

hypothetical protein
0.8885

7588

hypothetical protein
0.8879

42646

PRK04342
0.8873

5256

hypothetical protein
0.8869

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
2OG-FeII_Oxy superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 97.4802 4.48E-25 198 - 286 superfamily 251775
2OG-FeII_Oxy superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 97.4802 4.48E-25 198 - 286 superfamily 251775
DIOX_N superfamily non-haem dioxygenase in morphine synthesis N-terminal; This is the highly conserved N-terminal... - 93.459 1.58E-23 14 - 130 superfamily 258418
DIOX_N superfamily non-haem dioxygenase in morphine synthesis N-terminal; This is the highly conserved N-terminal... - 93.459 1.58E-23 14 - 130 superfamily 258418
PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein - 197.891 2.35E-59 4 - 345 multi-dom 178351

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_44178 PHATR_44178 182633 181572 471326 Not available AT3G19010.1 470337

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005506 GO:0016216 GO:0017000 GO:0016707 -

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0016216

isopenicillin-N synthase activity

Details: 
Catalysis of the reaction: N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine + O(2) = 2 H(2)O + isopenicillin N.
GO Category: 
MF

GO:0017000

antibiotic biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
GO Category: 
BP

GO:0016707

gibberellin 3-beta-dioxygenase activity

Details: 
Catalysis of the reaction: a gibberellin + 2-oxoglutarate + O2 = a 3-beta-hydroxy-gibberellin + succinate + CO2.
GO Category: 
MF

Add comment

Log in to post comments