27834 PcnB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
27834 chr_4 PcnB 848391 850495 - PcnB

Synonyms

NCBI ID Ensembl Genomes exon ID
7447909 Thaps27834.1, Thaps27834.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0457

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0005
 0.39

Most Highly Correlated Transcripts

38513

AarF
0.8808

1681

Telomere_reg-2 superfamily
0.8605

25319

hypothetical protein
0.8562

9148

hypothetical protein
0.8546

261357

NAD_binding_8 superfamily
0.8519

33039

SpoT
0.8488

39955

ARM
0.8483

263610

COG3899
0.8461

10873

NA
0.8423

32503

LETM1 superfamily
0.8236

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; CCA-adding enzymes add the... cl11966 118.464 1.25E-31 4 - 157 specific 143388
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 118.464 1.25E-31 4 - 157 superfamily 264491
PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] - 136.769 1.20E-35 5 - 268 multi-dom 223690

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_33610 PHATR_33610 203942 65334 Not available Cre17.g726100.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0016779 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0016779

nucleotidyltransferase activity

Details: 
Catalysis of the transfer of a nucleotidyl group to a reactant.
GO Category: 
MF

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