28049 PTZ00084
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
28049 chr_4 PTZ00084 1990484 1991376 + PTZ00084
NCBI ID Ensembl Genomes exon ID
7452207 Thaps28049.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0047
Normalized Mean Residue
Thaps_bicluster_0227
0.33
(RL7) Ribosomal_L7_archeal_euk
0.9272
(RL13A) Ribosomal_L13
0.904
(RS6) Ribosomal_S6e superfamily
0.9014
(RS7) Ribosomal_S7e
0.8949
(RL13e) Ribosomal_L13e superfamily
0.8922
(RL8) PTZ00180
0.89
(RL18) Ribosomal_L18e superfamily
0.8888
(RL6) KOW_RPL6
0.8882
(RS3A) Ribosomal_S3Ae
0.8784
WD40
0.8693
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is... cl00098 151.221 4.47E-46 19 - 99 specific 239096
KH-II superfamily KH-II (K homology RNA-binding domain, type II). KH binds single-stranded RNA or DNA. It is found... - 151.221 4.47E-46 19 - 99 superfamily 260189
Ribosomal_S3_C superfamily Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, hence the... - 78.703 5.88E-19 108 - 192 superfamily 249666
Ribosomal_S3_C superfamily Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, hence the... - 78.703 5.88E-19 108 - 192 superfamily 249666
PTZ00084 40S ribosomal protein S3; Provisional - 380.163 7.84E-134 9 - 224 multi-dom 240260
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_33660 PHATRDRAFT_33660 272269 200128 415280 Cre02.g102250.t1.2 AT3G53870.1 287105
KEGG description KEGG Pathway
Ribosome map03010
GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0003676 GO:0015935 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

small ribosomal subunit

Details: 
The smaller of the two subunits of a ribosome.
GO Category: 
CC
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