28570 (L7Ae) Ribosomal_L7Ae superfamily
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
28570 chr_6 (L7Ae) Ribosomal_L7Ae superfamily 655282 656144 - Ribosomal_L7Ae superfamily
NCBI ID Ensembl Genomes exon ID
7448592 Thaps28570.2, Thaps28570.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0229
Normalized Mean Residue
Thaps_bicluster_0101
0.32
PTZ00248
0.9313
NBD_sugar-kinase_HSP70_actin superfamily
0.9119
SpoU
0.9101
AdoMet_MTases
0.9053
eRF1
0.9038
hypothetical protein
0.9036
hypothetical protein
0.9015
(RT4) RpsD
0.9007
hypothetical protein
0.897
(RM12) Ribosomal_L7_L12
0.897
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_L7Ae superfamily Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa,... - 105.995 3.94E-30 11 - 121 superfamily 260522
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9983 PHATRDRAFT_9983 187183 282116 460589 Cre06.g249250.t1.2 AT5G20160.1 284090
KEGG description KEGG Pathway
Spliceosome map03040
GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0030529 GO:0042254 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC

ribosome biogenesis

Details: 
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
GO Category: 
BP
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