2897 NGN_Euk
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
2897 chr_2 NGN_Euk 2156679 2160380 - NGN_Euk
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0242
(Tp_TAZ4_PHD2_ZZ2) KAT11 superfamily
0.9331
DEXDc
0.9174
hypothetical protein
0.9169
SWIRM
0.9158
Peptidase_C19 superfamily
0.908
hypothetical protein
0.9071
hypothetical protein
0.9042
NADB_Rossmann superfamily
0.9039
hypothetical protein
0.9036
hypothetical protein
0.9021
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NGN_Euk Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW... cl02766 116.861 2.24E-30 278 - 362 specific 193577
NGN superfamily N-Utilization Substance G (NusG) N-terminal (NGN) domain Superfamily; The N-Utilization Substance G... - 116.861 2.24E-30 278 - 362 superfamily 261435
KOW_Spt5_5 KOW domain of Spt5, repeat 5; Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at... cl00354 79.0657 1.30E-17 840 - 891 specific 240509
KOW superfamily KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is... - 61.7725 1.33E-11 609 - 669 superfamily 260377
KOW_Spt5_4 KOW domain of Spt5, repeat 4; Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at... cl00354 63.3077 3.03E-12 751 - 793 specific 240508
KOW superfamily KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is... - 61.7725 1.33E-11 609 - 669 superfamily 260377
KOW_Spt5_3 KOW domain of Spt5, repeat 3; Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at... cl00354 61.7725 1.33E-11 609 - 669 specific 240507
KOW superfamily KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is... - 61.7725 1.33E-11 609 - 669 superfamily 260377
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47388 PHATRDRAFT_47388 224310 283301 469967 Cre01.g031050.t1.2 AT4G08350.1 484339
KEGG description KEGG Pathway
Not available Not available
GO:0003735 GO:0005622 GO:0005840 GO:0006412 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP
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