30105 (FPS1) Trans_IPPS_HT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30105 chr_15 (FPS1) Trans_IPPS_HT 155523 156804 + Trans_IPPS_HT

Synonyms

NCBI ID Ensembl Genomes exon ID
7441960 Thaps30105.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0086

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0155
 0.30

Most Highly Correlated Transcripts

bd439

(bd439) POLBc_alpha
0.9244

1224

MFS transporter
0.9183

bd1306

(bd1306) NA
0.9157

bd1645

(bd1645) tpt
0.9139

bd1214

(bd1214) KISc_C_terminal
0.9132

bd843

(bd843) NA
0.908

bd1474

(bd1474) phytoene_desat
0.9042

bd1081

(bd1081) NA
0.9034

bd718

(bd718) PRK10387
0.9033

bd1160

(bd1160) Chloroa_b-bind superfamily
0.8976

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail; These trans-Isoprenyl Diphosphate Synthases (... cl00210 194.692 1.47E-59 48 - 358 specific 173833
Isoprenoid_Biosyn_C1 superfamily Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (... - 194.692 1.47E-59 48 - 358 superfamily 260263

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49325 PHATRDRAFT_49325 158950 298851 432696 Cre03.g207700.t1.1 AT4G17190.1 556668

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0008299 -

GO:0008299

isoprenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO Category: 
BP

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